View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521_low_55 (Length: 202)

Name: NF8521_low_55
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521_low_55
NF8521_low_55
[»] chr6 (31 HSPs)
chr6 (8-183)||(26617802-26617977)
chr6 (8-183)||(26723730-26723905)
chr6 (8-183)||(26811689-26811866)
chr6 (33-127)||(27214656-27214750)
chr6 (33-127)||(27234478-27234572)
chr6 (29-184)||(26949840-26949995)
chr6 (29-184)||(26848839-26848994)
chr6 (29-114)||(26959415-26959500)
chr6 (29-114)||(26635939-26636024)
chr6 (29-114)||(26741905-26741990)
chr6 (29-119)||(25071903-25071993)
chr6 (33-127)||(25579955-25580049)
chr6 (33-127)||(26143101-26143195)
chr6 (29-119)||(26975296-26975386)
chr6 (47-176)||(27337936-27338065)
chr6 (47-176)||(27398676-27398805)
chr6 (29-118)||(28297566-28297655)
chr6 (29-118)||(28514418-28514507)
chr6 (33-127)||(25538776-25538870)
chr6 (33-119)||(26056170-26056256)
chr6 (33-119)||(26076140-26076226)
chr6 (29-99)||(26937370-26937440)
chr6 (72-118)||(28234808-28234854)
chr6 (29-118)||(28185611-28185700)
chr6 (64-119)||(24715829-24715884)
chr6 (33-119)||(25481986-25482072)
chr6 (33-118)||(26656234-26656319)
chr6 (33-118)||(26762205-26762290)
chr6 (58-114)||(27664999-27665055)
chr6 (72-120)||(28181357-28181405)
chr6 (72-120)||(28227193-28227241)
[»] chr2 (1 HSPs)
chr2 (29-185)||(17993537-17993693)
[»] chr1 (3 HSPs)
chr1 (33-120)||(28127523-28127610)
chr1 (33-120)||(28164207-28164294)
chr1 (73-126)||(268241-268294)
[»] chr4 (5 HSPs)
chr4 (32-117)||(18699243-18699328)
chr4 (73-117)||(18655361-18655405)
chr4 (73-117)||(18723969-18724013)
chr4 (73-117)||(18731388-18731432)
chr4 (32-117)||(18679410-18679495)
[»] scaffold0038 (2 HSPs)
scaffold0038 (72-118)||(34970-35016)
scaffold0038 (72-120)||(27691-27739)
[»] scaffold0019 (1 HSPs)
scaffold0019 (64-120)||(58170-58226)
[»] chr8 (1 HSPs)
chr8 (73-126)||(29273667-29273720)


Alignment Details
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 26617977 - 26617802
Alignment:
Q  8 gagtgagatgaagaagcgtacttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgt 107  Q
    |||||| ||||||||| || ||||||||||||||||||||||||   |||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  26617977 gagtgaaatgaagaagtgtgcttgaaatgatagccagataagttataagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgt 26617878  T
Q  108 tattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttc 183  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| ||| | | ||||||||| | |||||||||    
T  26617877 tattttggaacctttcttcaaactcagtaagtgcttcaccatacctgttattgtaatgtcgtacttcagaaggttc 26617802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 26723905 - 26723730
Alignment:
Q  8 gagtgagatgaagaagcgtacttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgt 107  Q
    |||||| ||||||||| || ||||||||||||||||||||||||   |||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  26723905 gagtgaaatgaagaagtgtgcttgaaatgatagccagataagttataagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgt 26723806  T
Q  108 tattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttc 183  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| ||| | | ||||||||| | |||||||||    
T  26723805 tattttggaacctttcttcaaactcagtaagtgcttcaccatacctgttattgtaatgtcgtacttcagaaggttc 26723730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 26811866 - 26811689
Alignment:
Q  8 gagtgagatgaagaa--gcgtacttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttctt 105  Q
    |||||| ||||||||  || |||||||||||| |||||||||||||  || |||||| ||||||| ||||||||||||||||||| |||||||||| |||    
T  26811866 gagtgaaatgaagaatagcttacttgaaatgaaagccagataagttaccaacttggttaagagctatcttccatttctgcaaccgatccatgttttcctt 26811767  T
Q  106 gttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttc 183  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||| | ||| | |||||||| ||||||||||||||    
T  26811766 gttattttggaacatttcttcaaactcagtaagtgcttcaccatacttgttattttgatgtcgcacgtgagaaggttc 26811689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 27214750 - 27214656
Alignment:
Q  33 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttca 127  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||    
T  27214750 aatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttca 27214656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 27234478 - 27234572
Alignment:
Q  33 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttca 127  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||    
T  27234478 aatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttca 27234572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 26949995 - 26949840
Alignment:
Q  29 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 128  Q
    |||||||| |||||||||||||  ||| ||| ||  |||||| ||||||||||| ||||||||||||||||||| ||| | ||||||||||| ||||||     
T  26949995 ttgaaatggtagccagataagtcagcaactttgttcagagctatcttccatttcagcaaccgctccatgttttttttgctcttttggaacctctcttcat 26949896  T
Q  129 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttct 184  Q
     || || ||||||| ||||||| |||| | |||||||||| |||||||||||||||    
T  26949895 gcttagcaagtgcttcaccataactataattctgatgtcgcacgtgagaaggttct 26949840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 26848994 - 26848839
Alignment:
Q  29 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 128  Q
    |||||||| | |||||||||||| ||||| |||| ||||||| ||||||||||  |||| ||||||||| ||| |||||||||||| |||   ||||||     
T  26848994 ttgaaatggtggccagataagttagcagcatggttaagagctttcttccatttacgcaaacgctccatgctttccttgttattttgaaacacctcttcat 26848895  T
Q  129 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttct 184  Q
     || || ||||||| ||||||| ||| || |||||||||| || ||||||||||||    
T  26848894 gcttagcaagtgcttcaccataactactattctgatgtcgcacatgagaaggttct 26848839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 26959500 - 26959415
Alignment:
Q  29 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttg 114  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||||||| |||| |||||||    
T  26959500 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccgctccatgttttccttgctattttg 26959415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 26636024 - 26635939
Alignment:
Q  29 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttg 114  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||| |||||| ||||||||||| |||| |||||||    
T  26636024 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttg 26635939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 26741990 - 26741905
Alignment:
Q  29 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttg 114  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||| |||||| ||||||||||| |||| |||||||    
T  26741990 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttg 26741905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 25071993 - 25071903
Alignment:
Q  29 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacc 119  Q
    ||||||||||  ||||||||||| ||||||| || ||||||| |||||||| || ||||||||||||||| || |||||||||||| ||||    
T  25071993 ttgaaatgatgtccagataagttagcagcttcgttaagagctttcttccatgtcagcaaccgctccatgtgttccttgttattttgaaacc 25071903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 25580049 - 25579955
Alignment:
Q  33 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttca 127  Q
    |||||||||| || ||||| |||||||||  ||||||| |||||||||   |||| |||||||||||||||| ||||||||| ||||| ||||||    
T  25580049 aatgatagccggacaagttagcagcttgggtaagagctatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctcttca 25579955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 26143195 - 26143101
Alignment:
Q  33 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttca 127  Q
    |||||||||| || ||||| |||||||||  ||||||| |||||||||   |||| |||||||||||||||| ||||||||| ||||| ||||||    
T  26143195 aatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctcttca 26143101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 26975386 - 26975296
Alignment:
Q  29 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacc 119  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||  |||||||||||| |||||  || |||||||| ||||    
T  26975386 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttaagcaaccgctccaagttttcatttttattttgaaacc 26975296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 176
Target Start/End: Original strand, 27337936 - 27338065
Alignment:
Q  47 aagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaag-tgctgca 145  Q
    ||||| |||||||||  ||||||  |||||||||||| ||||| ||||||||||| |||||||||||||||| | ||||||  || || ||| |||| ||    
T  27337936 aagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgcttagtaagatgct-ca 27338034  T
Q  146 ccatacctattagtctgatgtcgtacgtgag 176  Q
    ||||| ||   ||||||||||||||||||||    
T  27338035 ccataactcccagtctgatgtcgtacgtgag 27338065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 176
Target Start/End: Original strand, 27398676 - 27398805
Alignment:
Q  47 aagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaag-tgctgca 145  Q
    ||||| |||||||||  ||||||  |||||||||||| ||||| ||||||||||| |||||||||||||||| | ||||||  || || ||| |||| ||    
T  27398676 aagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgcttagtaagatgct-ca 27398774  T
Q  146 ccatacctattagtctgatgtcgtacgtgag 176  Q
    ||||| ||   ||||||||||||||||||||    
T  27398775 ccataactcccagtctgatgtcgtacgtgag 27398805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 28297566 - 28297655
Alignment:
Q  29 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaac 118  Q
    |||||||| | |||||| ||||| |||| |||   ||||||  |||||||||||||||||| ||||||||| ||||||||||||||||||    
T  28297566 ttgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgttattcttgttattttggaac 28297655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 28514507 - 28514418
Alignment:
Q  29 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaac 118  Q
    |||||||| | |||||| ||||| |||| |||   ||||||  |||||||||||||||||| ||||||||| ||||||||||||||||||    
T  28514507 ttgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgttattcttgttattttggaac 28514418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 25538870 - 25538776
Alignment:
Q  33 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttca 127  Q
    |||||||||| || ||||| |||||||||  ||||||| |||||||||   |||| ||||||||||||||||  |||||||| ||||| ||||||    
T  25538870 aatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgtttttctcattattttgaaacctctcttca 25538776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 26056256 - 26056170
Alignment:
Q  33 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacc 119  Q
    |||||||||| || ||||| ||||||||   ||||||  |||||||||   |||| |||||||||||||||| ||||||||||||||    
T  26056256 aatgatagccggacaagttagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacc 26056170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 26076226 - 26076140
Alignment:
Q  33 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacc 119  Q
    |||||||||| || ||||| ||||||||   ||||||  |||||||||   |||| |||||||||||||||| ||||||||||||||    
T  26076226 aatgatagccggacaagttagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacc 26076140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 26937440 - 26937370
Alignment:
Q  29 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtt 99  Q
    |||||||| | |||||| ||||| || ||||||| ||||||| ||||||||||| |||||| |||||||||    
T  26937440 ttgaaatggtggccagacaagtttgccgcttggttaagagctatcttccatttccgcaacctctccatgtt 26937370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 28234854 - 28234808
Alignment:
Q  72 tcttccatttctgcaaccgctccatgtttttcttgttattttggaac 118  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||    
T  28234854 tcttccatttctgcaacctctccatgttatccttgttattttggaac 28234808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 28185700 - 28185611
Alignment:
Q  29 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaac 118  Q
    |||||||| | |||||| ||||| |||| |||   ||||||  |||||||||||||||||| ||||||| | | ||||||||||||||||    
T  28185700 ttgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgctatccttgttattttggaac 28185611  T

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Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 24715884 - 24715829
Alignment:
Q  64 aagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacc 119  Q
    ||||||||||||| ||||| ||||||| ||||||| || |||||||||||| ||||    
T  24715884 aagagctgtcttctatttcagcaaccggtccatgtgttccttgttattttgaaacc 24715829  T

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Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 25482072 - 25481986
Alignment:
Q  33 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacc 119  Q
    |||||||||| || || || ||||||||   ||||||  |||||||||   |||| |||||||||||||||| ||||||||||||||    
T  25482072 aatgatagccggacaaattagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacc 25481986  T

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Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 26656319 - 26656234
Alignment:
Q  33 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaac 118  Q
    |||| |||||||| ||||| ||||||| |   |||||  ||||||||| || ||||| || |||||||| ||||||||||||||||    
T  26656319 aatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaac 26656234  T

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Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 26762290 - 26762205
Alignment:
Q  33 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaac 118  Q
    |||| |||||||| ||||| ||||||| |   |||||  ||||||||| || ||||| || |||||||| ||||||||||||||||    
T  26762290 aatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaac 26762205  T

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Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 27664999 - 27665055
Alignment:
Q  58 ttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttg 114  Q
    ||||| |||||||  |||||||||| |||||||||||||||||| | ||| ||||||    
T  27664999 ttggtgaagagcttccttccatttcagcaaccgctccatgttttccatgtcattttg 27665055  T

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Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 28181405 - 28181357
Alignment:
Q  72 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacct 120  Q
    ||||||||||||||||||  |||||| | | ||||||||||||||||||    
T  28181405 tcttccatttctgcaacctatccatgctatgcttgttattttggaacct 28181357  T

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Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 28227241 - 28227193
Alignment:
Q  72 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacct 120  Q
    ||||||||||||||||||  |||||| | | ||||||||||||||||||    
T  28227241 tcttccatttctgcaacctatccatgctatgcttgttattttggaacct 28227193  T

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Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 17993537 - 17993693
Alignment:
Q  29 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 128  Q
    |||||||| | |||||||||||| |||||||||| ||||||| |||||||||||  ||||||||||||||||| |||| ||||||| || |  ||||||     
T  17993537 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcaacaaccgctccatgttttccttgctattttgaaaaccctcttcat 17993636  T
Q  129 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttctg 185  Q
     || || ||||||| ||||||| |||| | |||||||||| || |||||||||||||    
T  17993637 gcttagcaagtgcttcaccataactatcattctgatgtcgcacctgagaaggttctg 17993693  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 28127523 - 28127610
Alignment:
Q  33 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacct 120  Q
    |||| ||||| || ||||| |||||||||   |||||| |||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  28127523 aatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacct 28127610  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 28164207 - 28164294
Alignment:
Q  33 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacct 120  Q
    |||| ||||| || ||||| |||||||||   |||||| |||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  28164207 aatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacct 28164294  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 268241 - 268294
Alignment:
Q  73 cttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttc 126  Q
    ||||||||  |||||||||||||||||||||||| |||||||||| || |||||    
T  268241 cttccattgatgcaaccgctccatgtttttcttgctattttggaaactctcttc 268294  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 18699243 - 18699328
Alignment:
Q  32 aaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaa 117  Q
    ||||| ||||| || ||||| ||||||| |   ||||||  ||||||||  |||||||||||||||||||||||||||||||||||    
T  18699243 aaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttttcttgttattttggaa 18699328  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 18655361 - 18655405
Alignment:
Q  73 cttccatttctgcaaccgctccatgtttttcttgttattttggaa 117  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  18655361 cttccattgatgcaaccgctccatgtttttcttgttattttggaa 18655405  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 18723969 - 18724013
Alignment:
Q  73 cttccatttctgcaaccgctccatgtttttcttgttattttggaa 117  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  18723969 cttccattgatgcaaccgctccatgtttttcttgttattttggaa 18724013  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 18731388 - 18731432
Alignment:
Q  73 cttccatttctgcaaccgctccatgtttttcttgttattttggaa 117  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  18731388 cttccattgatgcaaccgctccatgtttttcttgttattttggaa 18731432  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 18679410 - 18679495
Alignment:
Q  32 aaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaa 117  Q
    ||||| ||||| || ||||| ||||||| |   ||||||  ||||||||  |||||||||||||||||||| ||||||||||||||    
T  18679410 aaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttttattgttattttggaa 18679495  T

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Target: scaffold0038 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 35016 - 34970
Alignment:
Q  72 tcttccatttctgcaaccgctccatgtttttcttgttattttggaac 118  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||    
T  35016 tcttccatttctgcaacctctccatgttatccttgttattttggaac 34970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 27739 - 27691
Alignment:
Q  72 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacct 120  Q
    ||||||||||||||||||  |||||| | | ||||||||||||||||||    
T  27739 tcttccatttctgcaacctatccatgctatgcttgttattttggaacct 27691  T

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Target: scaffold0019 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 58170 - 58226
Alignment:
Q  64 aagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacct 120  Q
    |||||||||||||||||||||||||| ||| ||| | | |||| |||||||||||||    
T  58170 aagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacct 58226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 29273667 - 29273720
Alignment:
Q  73 cttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttc 126  Q
    ||||||||  |||||||| ||||||||||||||| |||||||||| || |||||    
T  29273667 cttccattgatgcaaccgatccatgtttttcttgctattttggaaactctcttc 29273720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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