View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_low_8 (Length: 432)
Name: NF8521_low_8
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 12 - 413
Target Start/End: Complemental strand, 38843607 - 38843210
Alignment:
| Q |
12 |
agagataaaaattgtaaacataatttcaagcgataattaattttaaagtcaaaatcaatttgagtagaaaacatctaataaacatttaaaaatcaattta |
111 |
Q |
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| T |
38843607 |
agagataaaaattgtaaacataatttcaagcgataattaattttaaagtcaaaatcaatttgagtagaaaacatctaataaacatttaaaaatcaattta |
38843508 |
T |
|
| Q |
112 |
tacgtctccaaaatgtcccttnnnnnnnntctctaaaatgtattttatttccttcattaatagaacctgctaacatatatatactaaacaaaattataag |
211 |
Q |
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| T |
38843507 |
tacgtctccaaaatgtcccttaaaaaaa-tctctaaaatgtattttatttccttcattaatagaacctgctaacatata----ctaaacaaaattataag |
38843413 |
T |
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| Q |
212 |
cggaatgtaatttgcggtaaaaataatcattataagcaacaaaattcttagacattatggttgaatctaatacaa-cccacaaaatcgacttgtgaagta |
310 |
Q |
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| T |
38843412 |
cggaatgtaatttgcggtaaaaataatcattataagcaacaaaatttttagagattgtggtcgaatctaacacaatcccacaaaatcgatttgtgaggta |
38843313 |
T |
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| Q |
311 |
agaattacccctatctgtaaacatatattcataacatatttcccctacgaccatcaccattggacttgatttatggacataaacaatggatgacacgata |
410 |
Q |
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| T |
38843312 |
aggattgctcccatctgtaaacatatattcataacatatttcccctacgaccatcaccattggacttgattcatggacataaacaatggatgacacgata |
38843213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 42985122 - 42985172
Alignment:
| Q |
257 |
tcttagacattatggttgaatctaatacaacc-cacaaaatcgacttgtga |
306 |
Q |
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| T |
42985122 |
tcttagaaattatggttgagtctaacacaacctcacaaaatcgacttgtga |
42985172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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