View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521_low_9 (Length: 429)
Name: NF8521_low_9
Description: NF8521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 106 - 281
Target Start/End: Complemental strand, 2180864 - 2180689
Alignment:
| Q |
106 |
cagttgttattgttaataatttctccgtcaccagagttcgaatccagttcctttaactccttataacatgnnnnnnnntgtccaagttcagcagaaaggg |
205 |
Q |
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| T |
2180864 |
cagttgttattgttaataatttctccgtcaccagagtccgaacccagttcctttaactccttataacatgaaaaagaatgtccaagttcagcagaaaggg |
2180765 |
T |
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| Q |
206 |
aatggacaaacacacacgcgcgcagacatacacaaggtaaaatacccttctcatcatcaacattcagcaacgtatc |
281 |
Q |
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| T |
2180764 |
aatggacaaacacacacgctcgcagacatacacaaggtaaaatacccttctcatcatcaacattcagcaacgtatc |
2180689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 2181042 - 2180935
Alignment:
| Q |
1 |
agtaaacttacaactgaaatgccacctgctattgcagcatttgcagcttccaatgccacttctgcactatatgtaagtgacaaacaaaaagtaagccaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2181042 |
agtaaacttacaactgaaatgccacctgctattgcagcatttgcagcttccaatgccacttctgcactatatgtaagtgacaaacaaaaagtaagccaac |
2180943 |
T |
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| Q |
101 |
ataaacag |
108 |
Q |
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|||||||| |
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| T |
2180942 |
ataaacag |
2180935 |
T |
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