View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8522_high_12 (Length: 280)
Name: NF8522_high_12
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8522_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 40315504 - 40315738
Alignment:
| Q |
1 |
tgataaaggtcatggatttaatactttgttagataattttttatttaaaagataatttaaattaattgataagtggcagccaccaccgaacctcgccgga |
100 |
Q |
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| T |
40315504 |
tgataaaggtcatgggtttaatactttgttagataattttttatttaaaagataatttaaattaattgataagtggcagccaccaccgaacctcgccgga |
40315603 |
T |
|
| Q |
101 |
gcatcaccgtcaggtcaccgaagaactgctgcagaccgttgtccgccgccgcattggtcgccggagctcctccgtggaccaccacctgccaccctctctt |
200 |
Q |
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|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| |
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| T |
40315604 |
gcgtcaccgtcagatcaccgaagaactgctgcagaccgttgtccgccgccgcattggttgccggagcttcgccgtggaccaccacctgccaccctctctt |
40315703 |
T |
|
| Q |
201 |
ttatgaatattatattattcttttaaattatttgt |
235 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
40315704 |
ttataaatattatattattcttttaaattatttgt |
40315738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 39606046 - 39606101
Alignment:
| Q |
178 |
accaccacctgccaccctctcttttatgaatattatattattcttttaaattattt |
233 |
Q |
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|||||||| ||||||||||||||| || ||||||||||||||| |||||||||||| |
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| T |
39606046 |
accaccacttgccaccctctctttgattaatattatattattcatttaaattattt |
39606101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 39605888 - 39605938
Alignment:
| Q |
37 |
ttttttatttaaaagataatttaaattaattgataagtggcagccaccacc |
87 |
Q |
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| T |
39605888 |
ttttttattaaaaagataatttagattaatttataagtggcagccaccacc |
39605938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 38679395 - 38679343
Alignment:
| Q |
180 |
caccacctgccaccctctcttttatgaatattatattattcttttaaattatt |
232 |
Q |
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|||||| ||||||| |||||||||| ||||||||||||||| ||||| ||||| |
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| T |
38679395 |
caccacttgccaccatctcttttataaatattatattattcatttaatttatt |
38679343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 5899171 - 5899208
Alignment:
| Q |
28 |
gttagataattttttatttaaaagataatttaaattaa |
65 |
Q |
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| T |
5899171 |
gttagataactttttatttaaaagataatctaaattaa |
5899208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 19534648 - 19534730
Alignment:
| Q |
4 |
taaaggtcatggatttaatactttgttagataattttttatttaaaagataatttaaattaattgataagtggcagccaccac |
86 |
Q |
| |
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||||||||||| || || ||||||| |||||||||||||||||||||||| |||||||||||||| |||| |||||||||| |
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| T |
19534648 |
taaaggtcatgagttcaacactttgtgagataattttttatttaaaagatatattaaattaattgattagtgacagccaccac |
19534730 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 2438629 - 2438686
Alignment:
| Q |
29 |
ttagataattttttatttaaaagataatttaaattaattgataagtggcagccaccac |
86 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| ||||||||||||| | |||||||| |
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| T |
2438629 |
ttagataattatttatttaaaaaataatttaatctaattgataagtgtctgccaccac |
2438686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 18358339 - 18358393
Alignment:
| Q |
178 |
accaccacctgccaccctctcttttatgaatattatattattcttttaaattatt |
232 |
Q |
| |
|
|||||||| | |||||||||||||||| ||||||| ||||||| ||||| ||||| |
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| T |
18358339 |
accaccactttccaccctctcttttataaatattacattattcatttaatttatt |
18358393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 39448783 - 39448729
Alignment:
| Q |
178 |
accaccacctgccaccctctcttttatgaatattatattattcttttaaattatt |
232 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||| ||||||| ||||| ||||| |
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| T |
39448783 |
accaccacttgccaccctctcttttataaatattacattattcatttaatttatt |
39448729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 15055646 - 15055676
Alignment:
| Q |
33 |
ataattttttatttaaaagataatttaaatt |
63 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
15055646 |
ataattttttatttaaaagataatttaaatt |
15055676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 8803333 - 8803374
Alignment:
| Q |
178 |
accaccacctgccaccctctcttttatgaatattatattatt |
219 |
Q |
| |
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|||||||||| |||||||||||||||| ||||||| |||||| |
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| T |
8803333 |
accaccacctaccaccctctcttttattaatattacattatt |
8803374 |
T |
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