View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8522_high_15 (Length: 236)
Name: NF8522_high_15
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8522_high_15 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 1062113 - 1062032
Alignment:
| Q |
155 |
atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttc |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1062113 |
atcttaataatatacaaatgggaagaaacaaatagcaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttc |
1062032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 31606015 - 31606081
Alignment:
| Q |
155 |
atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa |
221 |
Q |
| |
|
|||||||||||||||||||| ||| | | |||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
31606015 |
atcttaataatatacaaatgtgaaaacataaatagaaaaaaaatttgcttcaatccaatgtgtcaaa |
31606081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 31954151 - 31954085
Alignment:
| Q |
155 |
atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa |
221 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||| ||| |||||||||| |||||| ||||||| |
|
|
| T |
31954151 |
atcttaataatatacaaatgtgaagccacaaataggaaatttttttgcaccagtccaatatgtcaaa |
31954085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 34024300 - 34024377
Alignment:
| Q |
159 |
taataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttc |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34024300 |
taataatatacaaatgggaagaaacaaatagcaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttc |
34024377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 12633121 - 12633055
Alignment:
| Q |
155 |
atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa |
221 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| |||||| ||||| ||||| ||||||||||| |
|
|
| T |
12633121 |
atcttaataatatacaaatgtgaagacacaaataggaaaaaaatttgcttcaatctaatgtgtcaaa |
12633055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 34977280 - 34977355
Alignment:
| Q |
161 |
ataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttc |
236 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34977280 |
ataatatacaaatgggaagaaacaaatagcaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttc |
34977355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 26125103 - 26125170
Alignment:
| Q |
155 |
atcttaataatatacaaatgggaagaaacaaatagtaaaa-aattttgcaccaatccaatgtgtcaaa |
221 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
26125103 |
atcttaataatatacaaatgtgaagctacaaataggaaaaaaattttgccccaatccaatgtgtcaaa |
26125170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 25571870 - 25571937
Alignment:
| Q |
155 |
atcttaataatatacaaatgggaagaaacaaata-gtaaaaaattttgcaccaatccaatgtgtcaaa |
221 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| | |||||| ||||| |||||||||||||||||| |
|
|
| T |
25571870 |
atcttaataatatacaaatgtgaagctacaaataggaaaaaaaatttgccccaatccaatgtgtcaaa |
25571937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 26006338 - 26006405
Alignment:
| Q |
155 |
atcttaataatatacaaatgggaagaaacaaata-gtaaaaaattttgcaccaatccaatgtgtcaaa |
221 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| | |||||| ||||| |||||||||||||||||| |
|
|
| T |
26006338 |
atcttaataatatacaaatgtgaagctacaaataggaaaaaaaatttgccccaatccaatgtgtcaaa |
26006405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 14935680 - 14935761
Alignment:
| Q |
155 |
atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttc |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14935680 |
atcttaataatatacaaatgggaagaaacaaatggcaaaaaaatttgtaccaatccaatgtgtcaaatcctcaagccccttc |
14935761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 6495048 - 6494990
Alignment:
| Q |
97 |
agttatttctcgaaaccttaaaaacacaaaaa--tattattcaagagtgatctctcgaa |
153 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
6495048 |
agttatttctcaaaacctttaaaacataaaaaaatattattcgagagtgatctctcgaa |
6494990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 20087557 - 20087638
Alignment:
| Q |
155 |
atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttc |
236 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
20087557 |
atcttaataatatacaaatgtgaagaaacaaataggaaaaaaatttgcaccaatccaatgtgtcacatcctcaagcctcttc |
20087638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 45291743 - 45291677
Alignment:
| Q |
155 |
atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa |
221 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
45291743 |
atcttaataatatacaaatgtgaagacacaaataggaaaaaatattgcttcaatccaatgtgtcaaa |
45291677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 23362923 - 23362990
Alignment:
| Q |
155 |
atcttaataatatacaaatgggaagaaacaaata-gtaaaaaattttgcaccaatccaatgtgtcaaa |
221 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
23362923 |
atcttaataatatacaaatgtaaagacacaaataggaaaaaaaaattgcaccaatccaatgtgtcaaa |
23362990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University