View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8522_high_2 (Length: 487)

Name: NF8522_high_2
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8522_high_2
NF8522_high_2
[»] chr5 (21 HSPs)
chr5 (257-473)||(1163930-1164146)
chr5 (20-229)||(1163693-1163902)
chr5 (257-473)||(1849620-1849836)
chr5 (269-473)||(3299149-3299353)
chr5 (269-473)||(3392042-3392246)
chr5 (20-159)||(1849904-1850046)
chr5 (20-159)||(3299472-3299614)
chr5 (20-159)||(3392365-3392507)
chr5 (268-468)||(38987356-38987556)
chr5 (274-468)||(40417946-40418140)
chr5 (20-158)||(40418223-40418361)
chr5 (20-159)||(39879753-39879892)
chr5 (20-159)||(38987644-38987783)
chr5 (20-159)||(39726357-39726496)
chr5 (268-422)||(39726115-39726269)
chr5 (268-422)||(39879517-39879671)
chr5 (19-156)||(39399801-39399938)
chr5 (19-159)||(39168785-39168925)
chr5 (276-422)||(39168603-39168749)
chr5 (291-422)||(39399601-39399735)
chr5 (268-434)||(40596325-40596485)
[»] chr4 (3 HSPs)
chr4 (284-473)||(25912538-25912727)
chr4 (20-152)||(25912298-25912430)
chr4 (19-85)||(44444771-44444837)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 257 - 473
Target Start/End: Original strand, 1163930 - 1164146
Alignment:
Q  257 atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163930 atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa 1164029  T
Q  357 cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1164030 cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 1164129  T
Q  457 tactaggcagaataatc 473  Q
    |||||||||||||||||    
T  1164130 tactaggcagaataatc 1164146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 1163693 - 1163902
Alignment:
Q  20 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagtgtgattattatttccaatatctttgacacgagca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163693 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagtgtgattattatttccaatatctttgacacgagca 1163792  T
Q  120 actatggcattagctaaacgatattttttggcagcagcagtataagtagcaaaagcatcaccatcttcatcatgttcatccttaaaaaccagcttcttct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163793 actatggcattagctaaacgatattttttggcagcagcagtataagtagcaaaagcatcaccatcttcatcatgttcatccttaaaaaccagcttcttct 1163892  T
Q  220 tctgtttatt 229  Q
    ||||||||||    
T  1163893 tctgtttatt 1163902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 257 - 473
Target Start/End: Complemental strand, 1849836 - 1849620
Alignment:
Q  257 atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa 356  Q
    |||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||  || ||||||||||||||    
T  1849836 atctaatttctcgataccgagaacaacatattccactaactgatgcctagagaatgaaggcgtgaagggtgcatcccagtaacgatcagcctttaagaaa 1849737  T
Q  357 cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 456  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1849736 cagcgggtcaaggtaaatggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 1849637  T
Q  457 tactaggcagaataatc 473  Q
    |||||||||||||||||    
T  1849636 tactaggcagaataatc 1849620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 269 - 473
Target Start/End: Complemental strand, 3299353 - 3299149
Alignment:
Q  269 aataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag 368  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299353 aataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag 3299254  T
Q  369 gtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa 468  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  3299253 gtaaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaa 3299154  T
Q  469 taatc 473  Q
    |||||    
T  3299153 taatc 3299149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 269 - 473
Target Start/End: Complemental strand, 3392246 - 3392042
Alignment:
Q  269 aataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag 368  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392246 aataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag 3392147  T
Q  369 gtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa 468  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  3392146 gtaaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaa 3392047  T
Q  469 taatc 473  Q
    |||||    
T  3392046 taatc 3392042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 1850046 - 1849904
Alignment:
Q  20 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagt---gtgattattatttccaatatctttgacacga 116  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||    
T  1850046 gtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcacacga 1849947  T
Q  117 gcaactatggcattagctaaacgatattttttggcagcagcag 159  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1849946 gcaactatggcattagctaaacgatattttttggcagcagcag 1849904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 3299614 - 3299472
Alignment:
Q  20 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagt---gtgattattatttccaatatctttgacacga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||||| ||||||    
T  3299614 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacga 3299515  T
Q  117 gcaactatggcattagctaaacgatattttttggcagcagcag 159  Q
    ||||| ||||||| |||||||||||||||||||||||||||||    
T  3299514 gcaaccatggcatcagctaaacgatattttttggcagcagcag 3299472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 3392507 - 3392365
Alignment:
Q  20 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagt---gtgattattatttccaatatctttgacacga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||||| ||||||    
T  3392507 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacga 3392408  T
Q  117 gcaactatggcattagctaaacgatattttttggcagcagcag 159  Q
    ||||| ||||||| |||||||||||||||||||||||||||||    
T  3392407 gcaaccatggcatcagctaaacgatattttttggcagcagcag 3392365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 268 - 468
Target Start/End: Complemental strand, 38987556 - 38987356
Alignment:
Q  268 caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa 367  Q
    ||||| |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||    
T  38987556 caatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaa 38987457  T
Q  368 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcaga 467  Q
    |||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||| ||| ||||  |||||||    
T  38987456 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaagcaacaacattaggaggcaga 38987357  T
Q  468 a 468  Q
    |    
T  38987356 a 38987356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 274 - 468
Target Start/End: Complemental strand, 40418140 - 40417946
Alignment:
Q  274 cgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaa 373  Q
    |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||||||||    
T  40418140 cgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaa 40418041  T
Q  374 tggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa 468  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||  ||| ||||||||| ||| ||||  ||||||||    
T  40418040 tggatcaagcaaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatattttcaccgaaagaagcaacaacattaggaggcagaa 40417946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 40418361 - 40418223
Alignment:
Q  20 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgagc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| ||||||||    
T  40418361 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaatatctttcacacgagc 40418263  T
Q  119 aactatggcattagctaaacgatattttttggcagcagca 158  Q
    ||| |  |||| |||||||| |||||||||||||||||||    
T  40418262 aaccacagcatcagctaaacaatattttttggcagcagca 40418223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 39879892 - 39879753
Alignment:
Q  20 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgagc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| ||||||| ||||||||    
T  39879892 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccagtatctttcacacgagc 39879794  T
Q  119 aactatggcattagctaaacgatattttttggcagcagcag 159  Q
    ||| |  |||| ||||||||||||||||||||| |||||||    
T  39879793 aaccacagcatcagctaaacgatattttttggcggcagcag 39879753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 38987783 - 38987644
Alignment:
Q  20 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgagc 118  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| | |||||||||| ||||||| ||||||||    
T  38987783 gtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg-tcattatttccagtatctttcacacgagc 38987685  T
Q  119 aactatggcattagctaaacgatattttttggcagcagcag 159  Q
    ||| |  |||| ||||||||||||||||||||| |||||||    
T  38987684 aaccacagcatcagctaaacgatattttttggcggcagcag 38987644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 39726496 - 39726357
Alignment:
Q  20 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgagc 118  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| | |||||||||| ||||||| ||||||||    
T  39726496 gtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg-tcattatttccagtatctttcacacgagc 39726398  T
Q  119 aactatggcattagctaaacgatattttttggcagcagcag 159  Q
    ||| |  |||| ||||||||||||||||||||| |||||||    
T  39726397 aaccacagcatcagctaaacgatattttttggcggcagcag 39726357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 268 - 422
Target Start/End: Complemental strand, 39726269 - 39726115
Alignment:
Q  268 caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa 367  Q
    ||||| |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||    
T  39726269 caatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaa 39726170  T
Q  368 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata 422  Q
    |||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  39726169 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata 39726115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 268 - 422
Target Start/End: Complemental strand, 39879671 - 39879517
Alignment:
Q  268 caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa 367  Q
    ||||| |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||    
T  39879671 caatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaa 39879572  T
Q  368 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata 422  Q
    |||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  39879571 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata 39879517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 39399938 - 39399801
Alignment:
Q  19 agtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgag 117  Q
    |||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| |||| | ||||||||||| || ||  |||||||    
T  39399938 agtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaaaattttccacacgag 39399840  T
Q  118 caactatggcattagctaaacgatattttttggcagcag 156  Q
    |||| | ||||| ||||||||| |||||||| |||||||    
T  39399839 caaccacggcatcagctaaacggtattttttagcagcag 39399801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 39168925 - 39168785
Alignment:
Q  19 agtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgag 117  Q
    |||||||||||||||||| |||||||| |||||||||| |||| ||||||||  |||||||||||| |||| | ||||||||||| |||||  |||||||    
T  39168925 agtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg-tcattatttccaaaatcttccacacgag 39168827  T
Q  118 caactatggcattagctaaacgatattttttggcagcagcag 159  Q
    |||| | ||||| |||||| ||||||||||||||||||||||    
T  39168826 caaccacggcatcagctaaccgatattttttggcagcagcag 39168785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 276 - 422
Target Start/End: Complemental strand, 39168749 - 39168603
Alignment:
Q  276 agaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatg 375  Q
    |||||| |||||| ||||||||||| ||||| ||||||| ||||||||||||||| |||||| | | ||||||||||| || |    |||||||||||||    
T  39168749 agaacaacatatttcactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactcatcagcctttaaggaaaaagcagtcaaggtaaatg 39168650  T
Q  376 gatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata 422  Q
    ||||||| ||||||| | |||||||||||||||| || |||||||||    
T  39168649 gatcaagtaaagtaatttttttggcaaccctagtgcatataacaata 39168603  T

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Target: chr5; HSP #20
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 291 - 422
Target Start/End: Complemental strand, 39399735 - 39399601
Alignment:
Q  291 actaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaa---ag 387  Q
    |||||||||| ||||  ||||||| ||||||| ||||||| |||||| ||| ||||||||||| || |   ||||||||||||||||||||||||   ||    
T  39399735 actaactgagtcctattgaatgaatgcgtgaaaggtgcattccagtagtgatcagcctttaaggaaaaagcggtcaaggtaaatggatcaagcaaagtag 39399636  T
Q  388 taaatgttttggcaaccctagtacaaataacaata 422  Q
    ||| | |||||||||||||||| || || ||||||    
T  39399635 taatttttttggcaaccctagtgcatatgacaata 39399601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 434
Target Start/End: Complemental strand, 40596485 - 40596325
Alignment:
Q  268 caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa 367  Q
    ||||| |||| |||| ||||||||||||||||  ||||| || ||||||||||||  |||||| |||||| ||| || | ||||||| |||||   ||||    
T  40596485 caatatcgagcacagaatattccactaactgactcctagtgagtgaaggcgtgaaaagtgcattccagtactgatcaacatttaagatacagtacctcaa 40596386  T
Q  368 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatattt 434  Q
    ||| ||   |||||||||||||| | |||| ||||||    ||||||| | |||||||| |||||||    
T  40596385 ggtgaa--aatcaagcaaagtaattcttttagcaacc----tacaaatgataataggactaatattt 40596325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 284 - 473
Target Start/End: Original strand, 25912538 - 25912727
Alignment:
Q  284 atattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagc 383  Q
    |||||| |||||||||||||||| |||| |||||||||||||||||| |||||| ||| ||||||| |||||||| || ||||||||||||||||||||     
T  25912538 atattcaactaactgaggcctagtgaattaaggcgtgaagggtgcattccagtactgatcagccttcaagaaacaatgagtcaaggtaaatggatcaagt 25912637  T
Q  384 aaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatc 473  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||  ||  ||||||||||||| ||||  |||||||| ||||    
T  25912638 aaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatatttacactgaaagaagcagcaacattaggaggcagaaaaatc 25912727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 25912298 - 25912430
Alignment:
Q  20 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgagc 118  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| ||||||||    
T  25912298 gtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaatatctttcacacgagc 25912396  T
Q  119 aactatggcattagctaaacgatattttttggca 152  Q
    ||| |   ||| ||||||||||||||||||||||    
T  25912397 aaccacatcatcagctaaacgatattttttggca 25912430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 44444771 - 44444837
Alignment:
Q  19 agtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagt 85  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||    
T  44444771 agtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagt 44444837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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