View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8522_high_4 (Length: 415)
Name: NF8522_high_4
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8522_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 22 - 408
Target Start/End: Complemental strand, 23056502 - 23056118
Alignment:
| Q |
22 |
tatctgtctgtatccttgattctctcctccgctgaatcatttcttgtgcttcttccctcttgtacttataggtacgtgtgacctaatttctaatgtttcc |
121 |
Q |
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| T |
23056502 |
tatctgtatgtatccttgattctctcctccgctgaatcatttcttgtgcttcttccctcttgtacttataggtacgtgtgacctaatttctaatgtttcc |
23056403 |
T |
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| Q |
122 |
tttggttcatacaataaagcctagtaacctgcaataagtgaatcattttcattcacaatccatcaattcattaactgacttgcacgacgcgtagctctta |
221 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23056402 |
tttggtttatacaataaagcctagtaacc--caataagtgaatcattttcattcacaatccatcaattcattaactgacttgcacgacgcgtagctctta |
23056305 |
T |
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| Q |
222 |
aaacacgatgtgtcttaggcagtgatgagacactttcaattcttcgtagccacgcaacgcacaactcatagcatgcatcgaatttgaggcattggcaaga |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23056304 |
aaacacgatgtgtcttaggcagtgatgagacactttcaattcttcgtagccacgcaacgcacaactcatagcatgcatcgaatttgaggcattggcaaga |
23056205 |
T |
|
| Q |
322 |
tacttctacatttccttcaacaacgcaacgggtggctcgtaacccacatcacacatgtaccaatagttgatccttcatctctgcttc |
408 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23056204 |
tacttctacatttccttcaacaatgcaacgggtggctcgtaacccacatcacacatgtaccaatagttgatccttcatctttgcttc |
23056118 |
T |
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