View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8522_high_6 (Length: 382)
Name: NF8522_high_6
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8522_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 23523477 - 23523109
Alignment:
| Q |
1 |
atgtatgaaaaattgacatgttattattaccaagcttaatttataataaatagactcttcataaattaaataaccaaaattggttattttagagatgaag |
100 |
Q |
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| T |
23523477 |
atgtatgaaaaattgacatgttattattaccaagcttaatttataataaatagactcttcataaattaaataaccaaaattggttattttagagatgaag |
23523378 |
T |
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| Q |
101 |
atccaaactaacatggtcgttacgtttagagtcataaacgtaacgattatgcgaagcagaagaagaag---gtactccttgtccactatgccacaaattt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23523377 |
atccaaactaacatggtcgttacgtttagagtcataaacgtaacgattatgcgaagcagaagaagaagaaggtactccttgtccactatgccacaaattt |
23523278 |
T |
|
| Q |
198 |
gatctttcctcagaagcaagcaaaggtaaaggacgttcatggttgaaactagggttactctgaactgtgccatttgggatacgccaaaaagctaaaggac |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23523277 |
gatctttcctcagaagcaagcaaaggtaaaggacgttcatggttgaaactagggttactctgaactgtgccatttgggatacgccaaaaagctaaaggac |
23523178 |
T |
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| Q |
298 |
taccattgataggttgttgttgagagtaagaagaagttgttggatggttatagaacctagttgagtttg |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23523177 |
taccattgataggttgttgttgagagtaagaagaagttgttggatggttatagaacctagttgagtttg |
23523109 |
T |
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