View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8522_high_7 (Length: 372)
Name: NF8522_high_7
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8522_high_7 |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 119 - 363
Target Start/End: Complemental strand, 48677651 - 48677397
Alignment:
| Q |
119 |
aatgacttggctgattattattggagagtgttagaagagtgtgttagagggtgtgtgacccaagcatccctcaaaaataaaaagaaactctgataattta |
218 |
Q |
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| T |
48677651 |
aatgacttggctgattattatttgagagtgttagaagagtctcttagaggatgtgtgactttagcatccctcaaaaataaaaagaaactctgataattta |
48677552 |
T |
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| Q |
219 |
gaataagaaatgttatggtcaca--cactgacactctcttttaacccacccaattataacctgtgttaacgttta----nnnnnnnnnnattattcatta |
312 |
Q |
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| T |
48677551 |
gaataaaaaatgttatggtcacatccactaacactctcttttaatccacctaattataacctgtgttaacgtttattttatttttttttattattaatta |
48677452 |
T |
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| Q |
313 |
aatcaggttttcacgtttcatcttctctgct---gctcct-caaacacaggttct |
363 |
Q |
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| T |
48677451 |
aataaggttttcacgtttcatcttctctgctgaagctcctacaaacacaggttct |
48677397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 48678116 - 48677999
Alignment:
| Q |
5 |
tgtgtcaacaacggaaattgtacagaagaaaggaattgcacaaatctaaacaaagtaaaatggataattggaatagatctggaaaatcttacagcaagaa |
104 |
Q |
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| T |
48678116 |
tgtgtcaacaacggaaattgtacagaagaaaggaattgcacaaatctaaacaaagtaaaatggataattggaatagatctggaaaattttacagcaagaa |
48678017 |
T |
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| Q |
105 |
ggagcataactacaaatg |
122 |
Q |
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| T |
48678016 |
ggagcataactacaaatg |
48677999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 363
Target Start/End: Complemental strand, 7196 - 7144
Alignment:
| Q |
312 |
aaatcaggttttcacgtttcatcttctctgctgct-cctcaaacacaggttct |
363 |
Q |
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| T |
7196 |
aaatcaggttttcacgtttcatcttatctgctgttcccacaaacacaggttct |
7144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 22607606 - 22607559
Alignment:
| Q |
126 |
tggctgattattattggagagtgttagaagagtgtgttagagggtgtg |
173 |
Q |
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| T |
22607606 |
tggctaattattattggagtgtgtaagaggagtgtgttagagggtgtg |
22607559 |
T |
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