View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8522_low_11 (Length: 413)
Name: NF8522_low_11
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8522_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 30208093 - 30208494
Alignment:
| Q |
1 |
tccttcaaaataaataacttaaacttgacttaaagcaagactcatatatatcaaaatagaggcaaaaattaaatcaaaatttgagggtaatatttcttaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
30208093 |
tccttcaaaataaataacttaaacttgacttaaagcaagactcatatatatcaaaatagagacaaaaattaaatcaaaatgtgagggtaatatttcttaa |
30208192 |
T |
|
| Q |
101 |
attcgtgtgattagactgctcacttgcaagttgaatctcattcggagttgtagtatcagtgagataaagcgtcatgagaggagtgaaattggaagtttta |
200 |
Q |
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| T |
30208193 |
actcgtgtgattatactgctcacttgcaagttgaatctcattcggagttgtagcatcagtgagataaagcgtcatgagaggagtgaaattggaagtttta |
30208292 |
T |
|
| Q |
201 |
ggtattgctttcaaaatagattctcgataagaaatagcagaggatgtggtagtgataggtggtttcaaattgggcatgataatagcccttccaaaatgct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30208293 |
ggtattgctttcaaaatagattctcgataagaaatagcagaggatgtggtagtgatgggtggtttcaaattgggcatgataatagcccttccaaaatgct |
30208392 |
T |
|
| Q |
301 |
ttgcactgtgaggggttacagcttccagaagagcaccgtcacgaagatgaagatgaaaatcatcaggttgtacaattgtcagctccattctttctgtctc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30208393 |
ttgcactgtgaggggttacagcttccagaagagcaccgtcacgaagatgaagatgaaaatcatcaggttgtacaattgttagctccattctttctgtctc |
30208492 |
T |
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| Q |
401 |
tg |
402 |
Q |
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|| |
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| T |
30208493 |
tg |
30208494 |
T |
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