View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8522_low_14 (Length: 365)
Name: NF8522_low_14
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8522_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 33856478 - 33856145
Alignment:
| Q |
19 |
aactctaactcttccggtgatggtcctagtgtctccgctgattcaacatccggtaaagcccagaagaagtctgggaagaagacagatctggataagggta |
118 |
Q |
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| T |
33856478 |
aactctaactcttccggtgatggtactagtgtctccgctgatttaacatccggtaaagcccagaagaagtctgggaagaagacagatctggataagggta |
33856379 |
T |
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| Q |
119 |
aatctgttgtagcttcttctggtgttaagaaggagccaaagactgaatctgatccgatgaatgttgacggtggtgataatgaagtttccaactccaaatt |
218 |
Q |
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| T |
33856378 |
aatctgttgtagcttcttctggtgttaagaaggagccaaagactgaatccgatccgatgaatgttgacggtggtgataatgaagtttccagctccaaatt |
33856279 |
T |
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| Q |
219 |
tataggggatccaattccaatagaggtggctaaactgcgctggccgaagcggtatcaggagaaggtataattctctttctttcgttttcttgtttacaaa |
318 |
Q |
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| T |
33856278 |
tctaggggatccaattccaatagaggcagctaaactgcgctggccgaagcggtatcaggagaaggtatacttctctttctttcgttttcttgtttacaaa |
33856179 |
T |
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| Q |
319 |
gaattgctgaatgattgaaatttggacatgatgt |
352 |
Q |
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| T |
33856178 |
gaactgctgaatgattgaaatttggacatgatgt |
33856145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 81 - 283
Target Start/End: Original strand, 28213979 - 28214181
Alignment:
| Q |
81 |
gaagaagtctgggaagaagacagatctggataagggtaaatctgttgtagcttcttctggtgttaagaaggagccaaagactgaatctgatccgatgaat |
180 |
Q |
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| T |
28213979 |
gaagaagtctaagaagaagacgcgtatggataatgataaatctgttgtagcttcttctattggtgagaagaagccaaagagtgaaactgttccgatgaat |
28214078 |
T |
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| Q |
181 |
gttgacggtggtgataatgaagtttccaactccaaatttataggggatccaattccaatagaggtggctaaactgcgctggccgaagcggtatcaggaga |
280 |
Q |
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| T |
28214079 |
gttgacgggggtgatgatgaagtttccaactccaaatttctcagagatccgattctgttaaaggaggctaaactgcgctggccgaaacggtatctggaga |
28214178 |
T |
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| Q |
281 |
agg |
283 |
Q |
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||| |
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| T |
28214179 |
agg |
28214181 |
T |
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