View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8522_low_18 (Length: 321)
Name: NF8522_low_18
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8522_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 33415534 - 33415833
Alignment:
| Q |
9 |
cagaacctgtggtacatgtgccaattgccaaagatcttggttgaatcttgaccc-attacatgttacatgtgggagttgggagataagctggacaaaact |
107 |
Q |
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| T |
33415534 |
cagaacctagggtacatgtgccaattgccaaagatcttggttgaatcttgaccccattacatgttacatgtaggagttgggagataagctggacaaaact |
33415633 |
T |
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| Q |
108 |
atgggggtccatagggtgtatttaaaattactcccaccaattccatgcaagaggatacagacataggtaggatgaggtttcaattaaattatcaacctta |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33415634 |
atgggggtccatagggtgtatttaaaattactcccaccaatgccatgcaagaggatacagacatgggtaggatgaggtttcaattaaattatcaacctta |
33415733 |
T |
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| Q |
208 |
aatgcaatctgtggacattttagatgtcctcctattatgattgaaatcaatgtcttactattggtacaataattataatgagtttttggacaatgattgt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33415734 |
aatgcaatctgtggacattttagatgtcctcctattaagattgaaatcaatgccttactattggtacaataattataatgagtttttggacaatgattgt |
33415833 |
T |
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