View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8522_low_2 (Length: 761)
Name: NF8522_low_2
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8522_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 18 - 751
Target Start/End: Original strand, 38728328 - 38729065
Alignment:
| Q |
18 |
ataatcagcaactaaacctatcctaatatcaccagcagagaaaaccttgatttgacatgtatgaatacactaatcattttgtaaa-------agaaaatc |
110 |
Q |
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||||| |||||||| |||||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||| ||||| || |||||| |
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| T |
38728328 |
ataatgagcaactacacctatcctaatatcaccaggagagaaaaccgtgatttgacatatatgaataccctaatcagtttgtcaagataataagaaaa-- |
38728425 |
T |
|
| Q |
111 |
acataattgtgacagcggatatgagcttttatgcactactcagcagcttttgtgggaaaaagaatataaatctaaaaagatcttattccaaattcttaaa |
210 |
Q |
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|| |||| ||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| |||||| |||||||||||||||| | |
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| T |
38728426 |
acctaatcatgacaacggatatgagcttttatgcattactccacagcttttgagggaaaaagaatataaatcttgaaagattttattccaaattcttaga |
38728525 |
T |
|
| Q |
211 |
tagtacatatctattatgatatagccttcctaaacatccaaagagtgtgcacctcaaacacctattagatattaagactgtgtttacattgcccttcccg |
310 |
Q |
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| T |
38728526 |
cagtacatatctgttatggtataattttcccaaacatatgaagagcgtacacctcaaa-acctattagatattaagcctgtgtttacattgccctgcctg |
38728624 |
T |
|
| Q |
311 |
caattagaggtttaggaggtgatagagatctgatttcgggtgcagaattggggaaaagtatgttcagcttgtgcatcaggatatcagccctagatggaat |
410 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38728625 |
caattagaggtttaggaggggatagagatctgatttcgggtgcagaattggggaaaagtatgttcagcttgtgcatcaggatatcagccctagatggaat |
38728724 |
T |
|
| Q |
411 |
ttcattcagaagaaactgttgaactatcggtttcttaaaccactccatgacagaatctcctggtgctctaagaacaactttactcacctcaaatggagac |
510 |
Q |
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| T |
38728725 |
ttcattcagaagaaactgctgaactattggtttcttaaaccactccatgacagaatctcccggcgccctaagaaccactttacttacctcaaacggagac |
38728824 |
T |
|
| Q |
511 |
tctaccgagcttaacatctgcgcaatcacaatctttaaagttggtcccgtcaccaatttaatccgtctcgggacaataccataatatagcatacgctttc |
610 |
Q |
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| T |
38728825 |
tctactgagcttaacatctgcgcaatcacaatctttaaagttggtcccgtcaccaatttaatccgtctcgggacaatgccataatacagcatgcgctttc |
38728924 |
T |
|
| Q |
611 |
tgaacctatgaagagtgtgcaccgctgctataagggtggctccaacagacaagtttctaacatcaagggaccaagcaatgtgctgatcgaaaactatagc |
710 |
Q |
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| T |
38728925 |
tgaacctatgaagagtgtgcaccgcagctataagggcggctccaacagacaagtttctaacatcaagggaccaagctatgtgctgatcgaaaactatagc |
38729024 |
T |
|
| Q |
711 |
ctttgggaaaagtttattctcataagcaaccttccaaacac |
751 |
Q |
| |
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| T |
38729025 |
ctttgggaaaagtttattctcataagcaaccttccaaacac |
38729065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 346 - 751
Target Start/End: Complemental strand, 386882 - 386477
Alignment:
| Q |
346 |
tcgggtgcagaattggggaaaagtatgttcagcttgtgcatcaggatatcagccctagatggaatttcattcagaagaaactgttgaactatcggtttct |
445 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
386882 |
tcgggtgcagaattgggaaaaagtatgttcagcttgtgcatcaggatatcagccctagatggaatttcattcagaagaaactgctgaactatcggtttct |
386783 |
T |
|
| Q |
446 |
taaaccactccatgacagaatctcctggtgctctaagaacaactttactcacctcaaatggagactctaccgagcttaacatctgcgcaatcacaatctt |
545 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
386782 |
taaaccactccatgacagaatctcctggtgctctaagaacaactttactcacctcaaatggagactctaccgagcctaacatctgcacaatcacaatctt |
386683 |
T |
|
| Q |
546 |
taaagttggtcccgtcaccaatttaatccgtctcgggacaataccataatatagcatacgctttctgaacctatgaagagtgtgcaccgctgctataagg |
645 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386682 |
taaagttggtcccgtcaccaatttaatccgtcttgggacaataccataatatagcatacgctttctgaacctatgaagagtgtgcaccgctgctataagg |
386583 |
T |
|
| Q |
646 |
gtggctccaacagacaagtttctaacatcaagggaccaagcaatgtgctgatcgaaaactatagcctttgggaaaagtttattctcataagcaaccttcc |
745 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
386582 |
gcggctccaacagacaagtttctaacatcaagggaccaagcaatgtgctgatcgaaaactatagcctttgagaaaagtttattctcataagcaaccttcc |
386483 |
T |
|
| Q |
746 |
aaacac |
751 |
Q |
| |
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|||||| |
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| T |
386482 |
aaacac |
386477 |
T |
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