View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8522_low_20 (Length: 288)
Name: NF8522_low_20
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8522_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 10 - 270
Target Start/End: Original strand, 34508893 - 34509155
Alignment:
| Q |
10 |
agagagagaaccaaaccgatattttgaaattaaagaaatagcatacaattaaaaataaaacagattaactacacttgattaacnnnnnnnnnnnggtgaa |
109 |
Q |
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| T |
34508893 |
agagacagaaccaaacccatattttgaaattaaagaaatagcatagaattaaaaataaaacaaattaactacagttgattaacaaaaaaaaaa-ggtgca |
34508991 |
T |
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| Q |
110 |
taaaatggattacctggagagaaaaatccaatgggtttccatggattgaaacagacatatggagatggggatgatttcgagattcaaatatgaattggaa |
209 |
Q |
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| T |
34508992 |
tagaatggattacctggagagaaaaatccaacgtgtttccacggattgaaacaggcatatggagatggggatgattttgagcagcagatttgaattggaa |
34509091 |
T |
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| Q |
210 |
ttttctt---actctcaatctcattgtcctcgaagtggtttcaggtgaggttgccggaagtgga |
270 |
Q |
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| T |
34509092 |
ttttcttctcgctctcaatctcatcattcttgaagtggtttcaggtgaggttgccggaagtgga |
34509155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 161 - 270
Target Start/End: Original strand, 44619601 - 44619713
Alignment:
| Q |
161 |
cagacatatggagatggggatgatttcgagattcaaatatgaattggaattttctta---ctctcaatctcattgtcctcgaagtggtttcaggtgaggt |
257 |
Q |
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| T |
44619601 |
cagacatatggagatggggatgattttgagtggcagatttgaattggaattttcttatcgctctcaatctcatcattctcgaagtagtttcaggtgaggt |
44619700 |
T |
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| Q |
258 |
tgccggaagtgga |
270 |
Q |
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| T |
44619701 |
tgccggaagtgga |
44619713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 44784938 - 44785017
Alignment:
| Q |
104 |
ggtgaataaaatggattacctggagagaaaaatccaatgggtttccatggattgaaacagacatatggagatggggatga |
183 |
Q |
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| T |
44784938 |
ggtgaatagaatggattacctggagagaaaaatccaacgtgtttccatggattgaaacaggcatgtggagatgcggatga |
44785017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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