View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8522_low_22 (Length: 280)

Name: NF8522_low_22
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8522_low_22
NF8522_low_22
[»] chr8 (5 HSPs)
chr8 (1-235)||(40315504-40315738)
chr8 (178-233)||(39606046-39606101)
chr8 (37-87)||(39605888-39605938)
chr8 (180-232)||(38679343-38679395)
chr8 (28-65)||(5899171-5899208)
[»] chr5 (3 HSPs)
chr5 (4-86)||(19534648-19534730)
chr5 (29-86)||(2438629-2438686)
chr5 (178-232)||(18358339-18358393)
[»] chr2 (1 HSPs)
chr2 (178-232)||(39448729-39448783)
[»] chr1 (1 HSPs)
chr1 (33-63)||(15055646-15055676)
[»] chr7 (1 HSPs)
chr7 (178-219)||(8803333-8803374)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 40315504 - 40315738
Alignment:
Q  1 tgataaaggtcatggatttaatactttgttagataattttttatttaaaagataatttaaattaattgataagtggcagccaccaccgaacctcgccgga 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40315504 tgataaaggtcatgggtttaatactttgttagataattttttatttaaaagataatttaaattaattgataagtggcagccaccaccgaacctcgccgga 40315603  T
Q  101 gcatcaccgtcaggtcaccgaagaactgctgcagaccgttgtccgccgccgcattggtcgccggagctcctccgtggaccaccacctgccaccctctctt 200  Q
    || |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||    
T  40315604 gcgtcaccgtcagatcaccgaagaactgctgcagaccgttgtccgccgccgcattggttgccggagcttcgccgtggaccaccacctgccaccctctctt 40315703  T
Q  201 ttatgaatattatattattcttttaaattatttgt 235  Q
    |||| ||||||||||||||||||||||||||||||    
T  40315704 ttataaatattatattattcttttaaattatttgt 40315738  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 39606046 - 39606101
Alignment:
Q  178 accaccacctgccaccctctcttttatgaatattatattattcttttaaattattt 233  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||||||||||||    
T  39606046 accaccacttgccaccctctctttgattaatattatattattcatttaaattattt 39606101  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 39605888 - 39605938
Alignment:
Q  37 ttttttatttaaaagataatttaaattaattgataagtggcagccaccacc 87  Q
    ||||||||| ||||||||||||| ||||||| |||||||||||||||||||    
T  39605888 ttttttattaaaaagataatttagattaatttataagtggcagccaccacc 39605938  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 38679395 - 38679343
Alignment:
Q  180 caccacctgccaccctctcttttatgaatattatattattcttttaaattatt 232  Q
    |||||| ||||||| |||||||||| ||||||||||||||| ||||| |||||    
T  38679395 caccacttgccaccatctcttttataaatattatattattcatttaatttatt 38679343  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 5899171 - 5899208
Alignment:
Q  28 gttagataattttttatttaaaagataatttaaattaa 65  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  5899171 gttagataactttttatttaaaagataatctaaattaa 5899208  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 19534648 - 19534730
Alignment:
Q  4 taaaggtcatggatttaatactttgttagataattttttatttaaaagataatttaaattaattgataagtggcagccaccac 86  Q
    |||||||||||  || || ||||||| ||||||||||||||||||||||||  |||||||||||||| |||| ||||||||||    
T  19534648 taaaggtcatgagttcaacactttgtgagataattttttatttaaaagatatattaaattaattgattagtgacagccaccac 19534730  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 2438629 - 2438686
Alignment:
Q  29 ttagataattttttatttaaaagataatttaaattaattgataagtggcagccaccac 86  Q
    |||||||||| ||||||||||| |||||||||  ||||||||||||| | ||||||||    
T  2438629 ttagataattatttatttaaaaaataatttaatctaattgataagtgtctgccaccac 2438686  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 18358339 - 18358393
Alignment:
Q  178 accaccacctgccaccctctcttttatgaatattatattattcttttaaattatt 232  Q
    |||||||| | |||||||||||||||| ||||||| ||||||| ||||| |||||    
T  18358339 accaccactttccaccctctcttttataaatattacattattcatttaatttatt 18358393  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 39448783 - 39448729
Alignment:
Q  178 accaccacctgccaccctctcttttatgaatattatattattcttttaaattatt 232  Q
    |||||||| |||||||||||||||||| ||||||| ||||||| ||||| |||||    
T  39448783 accaccacttgccaccctctcttttataaatattacattattcatttaatttatt 39448729  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 15055646 - 15055676
Alignment:
Q  33 ataattttttatttaaaagataatttaaatt 63  Q
    |||||||||||||||||||||||||||||||    
T  15055646 ataattttttatttaaaagataatttaaatt 15055676  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 8803333 - 8803374
Alignment:
Q  178 accaccacctgccaccctctcttttatgaatattatattatt 219  Q
    |||||||||| |||||||||||||||| ||||||| ||||||    
T  8803333 accaccacctaccaccctctcttttattaatattacattatt 8803374  T

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