View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8522_low_25 (Length: 250)
Name: NF8522_low_25
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8522_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 49352135 - 49352371
Alignment:
| Q |
1 |
ttggagcagctacaaaatcgtctaaggaacgtgattgctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49352135 |
ttggagcagctacaaaatcgtctaaggaacgtgattgctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttg |
49352234 |
T |
|
| Q |
101 |
agttgaagtatttaatacaagtaggcgctgaagaaagtaaagtcttggtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49352235 |
agttgaagtatttaatacaagtaggcgctgaagaaagtaaagtcttggtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcata |
49352334 |
T |
|
| Q |
201 |
cattttggaaggtctttctctagaggattccttatct |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49352335 |
cattttggaaggtctttctctagaggattccttatct |
49352371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 49340777 - 49340962
Alignment:
| Q |
7 |
cagctacaaaatcgtctaaggaacgtgattgctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttgagttga |
106 |
Q |
| |
|
||||||||||||| ||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49340777 |
cagctacaaaatcatctgagaaatgtgattcctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttgagttga |
49340876 |
T |
|
| Q |
107 |
agtatttaatacaagtaggcgctgaagaaagtaaagtcttggtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacatttt |
206 |
Q |
| |
|
|| |||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
49340877 |
agaatttaatacaagtaggtgctgaaggaagtaaact------------------ccactcaattgccaaaatgatgggcatcaacacatcatacatttt |
49340958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 32784134 - 32783931
Alignment:
| Q |
7 |
cagctacaaaatcgtctaaggaacgtgattgctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttgagttga |
106 |
Q |
| |
|
||||||||||||| ||| || || | ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32784134 |
cagctacaaaatcatctgagaaatgagattgctggtaaaaagttcttgctcgtcttggacgatgtatggaaccaggatcgtgtcaaatgggttgagttga |
32784035 |
T |
|
| Q |
107 |
agtatttaatacaagtaggcgctgaagaaagtaaagtcttggtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacatttt |
206 |
Q |
| |
|
|| |||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32784034 |
agaatttaatacaagtaggtgctgaaggaagtaaagtcttagtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacatttt |
32783935 |
T |
|
| Q |
207 |
ggaa |
210 |
Q |
| |
|
|||| |
|
|
| T |
32783934 |
ggaa |
32783931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 35 - 233
Target Start/End: Original strand, 29743524 - 29743722
Alignment:
| Q |
35 |
ttgctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttgagttgaagtatttaatacaagtaggcgctgaaga |
134 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| || |||||||||||||||| |||||||||| | ||| ||||| ||||| |||||||||| | ||||| |
|
|
| T |
29743524 |
ttgctggtaaaaaattctttctcgtcttggatgacgtatggaatgaggatcatgtcaaatggatagaggtgaagaatttattacaagtaggagatgaagg |
29743623 |
T |
|
| Q |
135 |
aagtaaagtcttggtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacattttggaaggtctttctctagaggattcctt |
233 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| |||||||| |||| || |||||||||| |||||||||||| ||| | |||||||||| |
|
|
| T |
29743624 |
aagtaaagttttagtgactacacgtagccactcaattgctgaaatgatgtgcacaaatacatcatacactttggaaggtctctctagaaaggattcctt |
29743722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 35 - 233
Target Start/End: Original strand, 29750561 - 29750759
Alignment:
| Q |
35 |
ttgctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttgagttgaagtatttaatacaagtaggcgctgaaga |
134 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||| || || |||| |||||||||||||||||| | ||| ||||| || || |||||||||| | ||||| |
|
|
| T |
29750561 |
ttgctggcaaaaaattcttgctcgtcttggatgacgtgtggagcgaggatcgtgtcaaatggatagaggtgaagaatctattacaagtaggagatgaagg |
29750660 |
T |
|
| Q |
135 |
aagtaaagtcttggtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacattttggaaggtctttctctagaggattcctt |
233 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||||||| ||||||||| |||| |||||||| |||| |||| ||||||||||| |||||||||||| |
|
|
| T |
29750661 |
aagtaaagttttagtgactacacgtagtcactcaattgctaaaatgatgtgcacaaacacatcttacactttgcaaggtctttctagagaggattcctt |
29750759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 35 - 233
Target Start/End: Complemental strand, 29602733 - 29602535
Alignment:
| Q |
35 |
ttgctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttgagttgaagtatttaatacaagtaggcgctgaaga |
134 |
Q |
| |
|
||||||| ||||| ||||| || |||||||| || || |||| |||||||||||||||||| | ||| ||||| || || |||||||||| | ||||| |
|
|
| T |
29602733 |
ttgctggcaaaaaattcttgcttgtcttggatgacgtgtggagcgaggatcgtgtcaaatggatagaggtgaagaatctattacaagtaggagatgaagg |
29602634 |
T |
|
| Q |
135 |
aagtaaagtcttggtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacattttggaaggtctttctctagaggattcctt |
233 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||||||| ||||||||| |||| |||||||| |||| |||| ||||||||||| |||||||||||| |
|
|
| T |
29602633 |
aagtaaagttttagtgactacacgtagtcactcaattgctaaaatgatgtgcacaaacacatcttacactttgcaaggtctttctagagaggattcctt |
29602535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 219
Target Start/End: Original strand, 35157679 - 35157863
Alignment:
| Q |
35 |
ttgctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttgagttgaagtatttaatacaagtaggcgctgaaga |
134 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||| || || | | |||||||| || ||| ||| ||| |
|
|
| T |
35157679 |
ttgctggtcaaaagttcttacttgttttggacgatgtgtggaatgaggatcgtgtcaaatgggaagaatttaggggtttaataccagcaggtgctcaagg |
35157778 |
T |
|
| Q |
135 |
aagtaaagtcttggtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacattttggaaggtctttct |
219 |
Q |
| |
|
||||||||| | |||||| |||||||| || | | || || ||||||||||| |||| || |||| |||| |||| |||||| |
|
|
| T |
35157779 |
aagtaaagtactagtgacttcacgtagcgacacggtagctaacatgatgggcacttacacttcttacaatttgcaagggctttct |
35157863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University