View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8522_low_27 (Length: 240)

Name: NF8522_low_27
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8522_low_27
NF8522_low_27
[»] chr7 (6 HSPs)
chr7 (13-118)||(8236414-8236522)
chr7 (21-113)||(8239298-8239391)
chr7 (132-201)||(8236079-8236148)
chr7 (118-200)||(3194303-3194385)
chr7 (118-199)||(38877845-38877926)
chr7 (131-199)||(679070-679138)
[»] chr4 (4 HSPs)
chr4 (130-201)||(11377103-11377174)
chr4 (130-201)||(29367488-29367559)
chr4 (118-199)||(17174787-17174868)
chr4 (118-162)||(24493401-24493445)
[»] chr8 (1 HSPs)
chr8 (118-199)||(24221118-24221199)
[»] chr5 (3 HSPs)
chr5 (118-199)||(23029135-23029216)
chr5 (118-199)||(23114698-23114779)
chr5 (118-179)||(19222368-19222429)
[»] scaffold0855 (1 HSPs)
scaffold0855 (118-199)||(3909-3990)
[»] scaffold0847 (1 HSPs)
scaffold0847 (118-199)||(4074-4155)
[»] chr3 (1 HSPs)
chr3 (118-199)||(27992055-27992136)
[»] chr1 (2 HSPs)
chr1 (118-179)||(17739287-17739348)
chr1 (118-179)||(15421555-15421616)
[»] scaffold0088 (1 HSPs)
scaffold0088 (118-199)||(38977-39058)
[»] chr2 (3 HSPs)
chr2 (118-179)||(25592692-25592753)
chr2 (119-179)||(13004872-13004932)
chr2 (131-199)||(24371007-24371075)
[»] scaffold0001 (1 HSPs)
scaffold0001 (130-158)||(521205-521233)
[»] chr6 (5 HSPs)
chr6 (130-162)||(13168765-13168797)
chr6 (118-158)||(20221628-20221668)
chr6 (118-158)||(20225523-20225563)
chr6 (118-158)||(22115612-22115652)
chr6 (118-158)||(22119507-22119547)


Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 8236522 - 8236414
Alignment:
Q  13 tattttgagattgtattgtacttccgaaaatagttgaagtttttaccggaaattcattgatcacttcat--atattcccaaagtctc-gattaggtaaga 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||| ||||||||||| ||||| ||||||    
T  8236522 tattttgagattgtattgtacttccgaaaatagttgaagtttttaccgtaaattcattgatcacttcatatatatacccaaagtctctgattacgtaaga 8236423  T
Q  110 gtgtaccta 118  Q
    |||||||||    
T  8236422 gtgtaccta 8236414  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 8239391 - 8239298
Alignment:
Q  21 gattgtattgtacttccgaaaatagttgaagtttttaccggaaattcattgatcacttcata-tattcccaaagtctcgattaggtaagagtgt 113  Q
    |||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||| ||| || ||||||||||||||||||||||||    
T  8239391 gattgtattgtacttctgaaaatagttaaagtttttaccgtaaattcattgatcacttcatattataccaaaagtctcgattaggtaagagtgt 8239298  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 8236148 - 8236079
Alignment:
Q  132 aatcaaccatgagaatatgcgtggttgttatcgaggcacattcatggagaccgaaaagagatatgaaata 201  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  8236148 aatcaaccatgagaatatgtgtggttgttattgaggcacattcatggagaccgaacggagatatgaaata 8236079  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 3194385 - 3194303
Alignment:
Q  118 agggtttaaattacaatcaaccatgagaatatgcgtggttgttatcgaggcacattcatggagaccgaaaagagatatgaaat 200  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||||| ||   |||||||| |||| ||||| ||||||||||||    
T  3194385 agggtttcaataacaatcaaccatgagaataggcgtggttgttattgaaatacattcattgagatcgaaaggagatatgaaat 3194303  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 38877845 - 38877926
Alignment:
Q  118 agggtttaaattacaatcaaccatgagaatatgcgtggttgttatcgaggcacattcatggagaccgaaaagagatatgaaa 199  Q
    ||||||| |||  |||||||||||||||||| | ||||||||||| ||   |||||||| ||||||||||||||||||||||    
T  38877845 agggtttcaatagcaatcaaccatgagaataggtgtggttgttattgaaatacattcattgagaccgaaaagagatatgaaa 38877926  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 679138 - 679070
Alignment:
Q  131 caatcaaccatgagaatatgcgtggttgttatcgaggcacattcatggagaccgaaaagagatatgaaa 199  Q
    ||||||||||||||||||  |||||||| ||| ||   |||||||| ||||||||||  ||||||||||    
T  679138 caatcaaccatgagaatagacgtggttgctattgaaatacattcattgagaccgaaagaagatatgaaa 679070  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 11377174 - 11377103
Alignment:
Q  130 acaatcaaccatgagaatatgcgtggttgttatcgaggcacattcatggagaccgaaaagagatatgaaata 201  Q
    ||||||||||||||||||| ||||||||||||||||   ||||||||||| ||||||| ||| |||||||||    
T  11377174 acaatcaaccatgagaataagcgtggttgttatcgaaatacattcatggaaaccgaaaggagttatgaaata 11377103  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 29367488 - 29367559
Alignment:
Q  130 acaatcaaccatgagaatatgcgtggttgttatcgaggcacattcatggagaccgaaaagagatatgaaata 201  Q
    ||||||||||||||||||| || |||||||||| ||   ||||||||||||||||||| ||||||| |||||    
T  29367488 acaatcaaccatgagaataggcatggttgttattgaaatacattcatggagaccgaaaggagatatcaaata 29367559  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 17174787 - 17174868
Alignment:
Q  118 agggtttaaattacaatcaaccatgagaatatgcgtggttgttatcgaggcacattcatggagaccgaaaagagatatgaaa 199  Q
    ||||||| |||  |||||||||||||||||| ||||||| | ||| ||   |||||||| ||||| |||| |||||||||||    
T  17174787 agggtttcaatagcaatcaaccatgagaataggcgtggtagctattgaaatacattcattgagactgaaaggagatatgaaa 17174868  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 24493401 - 24493445
Alignment:
Q  118 agggtttaaattacaatcaaccatgagaatatgcgtggttgttat 162  Q
    ||||||| ||| ||||||||||||||||||| ||||| |||||||    
T  24493401 agggtttcaataacaatcaaccatgagaataggcgtgattgttat 24493445  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 24221199 - 24221118
Alignment:
Q  118 agggtttaaattacaatcaaccatgagaatatgcgtggttgttatcgaggcacattcatggagaccgaaaagagatatgaaa 199  Q
    ||||||| ||| |||||||| |||||||||| ||||||||| ||| ||   |||||||| |||||||||| |||||||||||    
T  24221199 agggtttcaataacaatcaatcatgagaataggcgtggttgctattgaaatacattcattgagaccgaaaggagatatgaaa 24221118  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 23029216 - 23029135
Alignment:
Q  118 agggtttaaattacaatcaaccatgagaatatgcgtggttgttatcgaggcacattcatggagaccgaaaagagatatgaaa 199  Q
    ||||||| |||  |||||||||||||||||| ||||||||| ||| ||   |||||||| |||||||||| |||||||||||    
T  23029216 agggttttaatagcaatcaaccatgagaataggcgtggttgctattgaaatacattcattgagaccgaaatgagatatgaaa 23029135  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 23114698 - 23114779
Alignment:
Q  118 agggtttaaattacaatcaaccatgagaatatgcgtggttgttatcgaggcacattcatggagaccgaaaagagatatgaaa 199  Q
    ||||||| ||| |||||||||||||||||||   ||||||||||| ||   |||||||| |||||||||| |||||||||||    
T  23114698 agggtttcaataacaatcaaccatgagaatagttgtggttgttattgaaatacattcattgagaccgaaaggagatatgaaa 23114779  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 19222368 - 19222429
Alignment:
Q  118 agggtttaaattacaatcaaccatgagaatatgcgtggttgttatcgaggcacattcatgga 179  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||| ||  |||| |||||||    
T  19222368 agggtttcaataacaatcaaccatgagaatatgcgtgattgttattgaaacacactcatgga 19222429  T

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Target: scaffold0855 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 3909 - 3990
Alignment:
Q  118 agggtttaaattacaatcaaccatgagaatatgcgtggttgttatcgaggcacattcatggagaccgaaaagagatatgaaa 199  Q
    ||||||| |||  ||||||| |||||||||| ||||||||| ||| ||   |||||||| |||||||||| |||||||||||    
T  3909 agggtttcaatagcaatcaatcatgagaataagcgtggttgctattgaaatacattcattgagaccgaaaggagatatgaaa 3990  T

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Target: scaffold0847 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 4074 - 4155
Alignment:
Q  118 agggtttaaattacaatcaaccatgagaatatgcgtggttgttatcgaggcacattcatggagaccgaaaagagatatgaaa 199  Q
    ||||||| |||  ||||||| |||||||||| ||||||||| ||| ||   |||||||| |||||||||| |||||||||||    
T  4074 agggtttcaatagcaatcaatcatgagaataagcgtggttgctattgaaatacattcattgagaccgaaaggagatatgaaa 4155  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 27992136 - 27992055
Alignment:
Q  118 agggtttaaattacaatcaaccatgagaatatgcgtggttgttatcgaggcacattcatggagaccgaaaagagatatgaaa 199  Q
    ||||||| ||| |||||||||||| |||||| ||||||||| ||| ||   |||||||| |||||| ||| |||||||||||    
T  27992136 agggtttcaataacaatcaaccataagaataagcgtggttgctattgaaatacattcattgagaccaaaaggagatatgaaa 27992055  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 17739287 - 17739348
Alignment:
Q  118 agggtttaaattacaatcaaccatgagaatatgcgtggttgttatcgaggcacattcatgga 179  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||| ||  |||| |||||||    
T  17739287 agggtttcaataacaatcaaccatgagaatatgcgtgattgttattgaaacacactcatgga 17739348  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 15421555 - 15421616
Alignment:
Q  118 agggtttaaattacaatcaaccatgagaatatgcgtggttgttatcgaggcacattcatgga 179  Q
    ||||||| ||| ||||||||||||||||||| ||||| ||||||| ||  |||| |||||||    
T  15421555 agggtttcaataacaatcaaccatgagaataggcgtgattgttattgaaacacactcatgga 15421616  T

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Target: scaffold0088 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 38977 - 39058
Alignment:
Q  118 agggtttaaattacaatcaaccatgagaatatgcgtggttgttatcgaggcacattcatggagaccgaaaagagatatgaaa 199  Q
    ||||||| |||  |||||||||||||||||| ||||||||| ||| ||   |||||||| |||||| ||| | |||||||||    
T  38977 agggtttcaatagcaatcaaccatgagaataggcgtggttgctattgaaatacattcatcgagacccaaaggtgatatgaaa 39058  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 25592753 - 25592692
Alignment:
Q  118 agggtttaaattacaatcaaccatgagaatatgcgtggttgttatcgaggcacattcatgga 179  Q
    ||||||| ||| ||||||||||||||||||| ||||| ||||| | || ||||| |||||||    
T  25592753 agggtttcaataacaatcaaccatgagaataggcgtgattgttgttgaagcacactcatgga 25592692  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 13004872 - 13004932
Alignment:
Q  119 gggtttaaattacaatcaaccatgagaatatgcgtggttgttatcgaggcacattcatgga 179  Q
    |||||||||| || ||||||||||| |||| ||||| ||||||||||  |||| |||||||    
T  13004872 gggtttaaataacgatcaaccatgataataggcgtgattgttatcgaaacacactcatgga 13004932  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 24371075 - 24371007
Alignment:
Q  131 caatcaaccatgagaatatgcgtggttgttatcgaggcacattcatggagaccgaaaagagatatgaaa 199  Q
    ||||||||||| |||||| | ||||||| ||| ||   |||||||| |||||||||| |||||||||||    
T  24371075 caatcaaccattagaataggtgtggttgctattgaaatacattcattgagaccgaaaggagatatgaaa 24371007  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 158
Target Start/End: Original strand, 521205 - 521233
Alignment:
Q  130 acaatcaaccatgagaatatgcgtggttg 158  Q
    |||||||||||||||||||||||||||||    
T  521205 acaatcaaccatgagaatatgcgtggttg 521233  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 13168765 - 13168797
Alignment:
Q  130 acaatcaaccatgagaatatgcgtggttgttat 162  Q
    ||||||||||||||||||| |||||||||||||    
T  13168765 acaatcaaccatgagaataggcgtggttgttat 13168797  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 20221628 - 20221668
Alignment:
Q  118 agggtttaaattacaatcaaccatgagaatatgcgtggttg 158  Q
    ||||||| |||  ||||||||||||||||||||||||||||    
T  20221628 agggtttcaatagcaatcaaccatgagaatatgcgtggttg 20221668  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 20225523 - 20225563
Alignment:
Q  118 agggtttaaattacaatcaaccatgagaatatgcgtggttg 158  Q
    ||||||| ||| ||||||||||||||||||| |||||||||    
T  20225523 agggtttcaataacaatcaaccatgagaataagcgtggttg 20225563  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 22115612 - 22115652
Alignment:
Q  118 agggtttaaattacaatcaaccatgagaatatgcgtggttg 158  Q
    ||||||| |||  ||||||||||||||||||||||||||||    
T  22115612 agggtttcaatagcaatcaaccatgagaatatgcgtggttg 22115652  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 22119507 - 22119547
Alignment:
Q  118 agggtttaaattacaatcaaccatgagaatatgcgtggttg 158  Q
    ||||||| ||| ||||||||||||||||||| |||||||||    
T  22119507 agggtttcaataacaatcaaccatgagaataagcgtggttg 22119547  T

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