View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8522_low_28 (Length: 236)
Name: NF8522_low_28
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8522_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 42196316 - 42196495
Alignment:
| Q |
16 |
agaggggagcaaaaataattgctgaatatttgggtggtgccataacatgt-----gatgctcatcacatgactgatccaaggtctgatggacttggtgtt |
110 |
Q |
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| T |
42196316 |
agaggggagcaaaaataattgctgaatatttgggtggtgccataacatgtgatgtgatgctcatcacatgactgatccaaggtctgatggacttggtgtt |
42196415 |
T |
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| Q |
111 |
tcatcttgcataaacaagagtttagaaaatgccggggtttcccctgaagaggtaacaaacaagtaattattaatatcgaa |
190 |
Q |
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| T |
42196416 |
tcatcttgcataaacaagagtttagaaaatgccggggtttcccctgaagaggtaacaaacaagtaattattaatatcgaa |
42196495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 42186555 - 42186704
Alignment:
| Q |
16 |
agaggggagcaaaaataattgctgaatatttgggtggtgccataacatgtgatgctcatcacatgactgatccaaggtctgatggacttggtgtttcatc |
115 |
Q |
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| T |
42186555 |
agaggggagcaagaataattgctgaatatttgggtggtgccataacatgtgatgctcatcacatgactgatcctagatctgatggactaggagtatcatc |
42186654 |
T |
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| Q |
116 |
ttgcataaacaagagtttagaaaatgccggggtttcccctgaagaggtaa |
165 |
Q |
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| T |
42186655 |
ttgcataaacaagggtttagaagatgctggggtttctcctgaagaggtaa |
42186704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 42203723 - 42203872
Alignment:
| Q |
16 |
agaggggagcaaaaataattgctgaatatttgggtggtgccataacatgtgatgctcatcacatgactgatccaaggtctgatggacttggtgtttcatc |
115 |
Q |
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| T |
42203723 |
agagaggagcaagaatactggcagaatatttgggtggtgccataacatgtgatgctcatcatatgactaatccaatgcctgatggacttggacagtcctc |
42203822 |
T |
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| Q |
116 |
ttgcataaacaagagtttagaaaatgccggggtttcccctgaagaggtaa |
165 |
Q |
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| T |
42203823 |
ttgcataagcaagagtttacaagatgctggggtttcccctcaagaggtaa |
42203872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 46610643 - 46610573
Alignment:
| Q |
33 |
attgctgaatatttgggtggtgccataacatgtgatgctcatcacatgactgatccaaggtctgatggact |
103 |
Q |
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| T |
46610643 |
attgctgaatatttgggaggtgctgttaactgtgatgcttatcacatgactgatccaagatctgacggact |
46610573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 38472681 - 38472754
Alignment:
| Q |
33 |
attgctgaatatttgggtggtgccataacatgtgatgctcatcacatgactgatccaaggtctgatggacttgg |
106 |
Q |
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| T |
38472681 |
attgctgaatacttgggaggtgctgtaaactgtgatgcttatcatatgactgatccaagatctgatgggcttgg |
38472754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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