View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8522_low_3 (Length: 691)
Name: NF8522_low_3
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8522_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 10 - 675
Target Start/End: Complemental strand, 32272868 - 32272206
Alignment:
| Q |
10 |
accttattttattagtatatgccacaattcttatagtattattcttaatctcattctttctcttgtttaatatgtctgcatgtgtatagaaaaacacaca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32272868 |
accttattttattagtatatgccacaattcttatagtattattcttaatctcattctttctcttgtttaatatgtctgcatgtgtatagaaaaacacaca |
32272769 |
T |
|
| Q |
110 |
agatttcattcatgtacaattgaatattctatatttgagaatgttctatggatttaatattcttttattattttctcaattgaaaagcacagatcctttt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32272768 |
agatttcattcatgtacaattgaatattctatatttgagaatgttctatggatttaatattcttttattattttctcaattgaaaagcacagatcctttt |
32272669 |
T |
|
| Q |
210 |
gttaaattaaaaaatcatactattcagcattgcatagatactgacatattgttacttttataaataatagtgttattagtacatatgatttccgacaccg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32272668 |
gttaaattaaaaaatcatactattcagcattgcatagatactgacatattgttacttttataaata--agtgttattagtacatatgatttccgacaccg |
32272571 |
T |
|
| Q |
310 |
tatcttgacaccatataacattgagtgtgatcttgtcaaaagaaaacatttagtatgaacaatggtcccgaggagagagaacaaacatcggatgataaag |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32272570 |
tatcttgacaccatataacattgagtgtgatcttgtcaaaagaaaacattgagtatgaacaatggtcccgaggagagagaacaaacatcggatgagaaag |
32272471 |
T |
|
| Q |
410 |
ataatataatttaaaactcgcaaaccttataaacatgttgtgtctgtgtctagatccgtgtcaagaaacatttcgcttttataaattatattattttcat |
509 |
Q |
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| T |
32272470 |
ataatataatttaaaacttgcaaaccttataaacatgttgtgtctgtgtctagatccgtgtcaagaaacatttcgcttttataaattatattattttcat |
32272371 |
T |
|
| Q |
510 |
gttcattaaattattcaattttggtcttaaccaataataagcatttcaaagtaatatacattgtttatatgtatgaattattttgattttgatcttcatg |
609 |
Q |
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| T |
32272370 |
gttca-taaattattcaattttggtcttaaccaataataagcatttcaaagtaatatacattgtttatatgtatgaattattttgattttgatcttcatg |
32272272 |
T |
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| Q |
610 |
tcacacagtgaaggaagttaagaaaaagcaaaaatggtgaaaatttgttgcattggagctggatat |
675 |
Q |
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| T |
32272271 |
tcacacagtgaaggaagttaagaaaaagcaaaaatggtgaaaatttgttgcattggagctggatat |
32272206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 639 - 671
Target Start/End: Complemental strand, 19327411 - 19327379
Alignment:
| Q |
639 |
aaaaatggtgaaaatttgttgcattggagctgg |
671 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
19327411 |
aaaaatggtgaagatttgttgcattggagctgg |
19327379 |
T |
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