View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8522_low_30 (Length: 236)
Name: NF8522_low_30
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8522_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5561193 - 5560972
Alignment:
| Q |
1 |
aattacctgagctttattgaaaaagactttatgtttcttactcataagaatctcagcttcaccttccttaataactgtaaaatcatccaaatttgtagcc |
100 |
Q |
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| T |
5561193 |
aattacctgagccttattgaaaaagactttatttttcttactcataagaatctcagcttcaccttccttaataactgtaaaatcatccaaatttgtagcc |
5561094 |
T |
|
| Q |
101 |
attgttttgcttatatcttgcaaaaacaaatcctgggtttgttcaattttcttcttttcttcttctgtgcagttagaagaagtacagaaagatttgaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5561093 |
attgttttgcttatatcttgcaaaaacaaatcctgggtttgttcaattttcttcttttcttcttctgtgcagttagaagaagtacagaaagatttgaaaa |
5560994 |
T |
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| Q |
201 |
tggaaaatggatttgttgcacg |
222 |
Q |
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||| ||| |||||||||||||| |
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| T |
5560993 |
tgggaaacggatttgttgcacg |
5560972 |
T |
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