View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8522_low_32 (Length: 233)
Name: NF8522_low_32
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8522_low_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 48792121 - 48791913
Alignment:
| Q |
7 |
tggagaagcagagagtaaaaggactgtgagagttgactgttttatgaaagaaaacagtgttaatatatatgttaggcctattagtggattaaccattgtt |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48792121 |
tggagaagaagagagtaaaaggactgtgagagttgactgttttatgaaagaaaacagtgttaatatatatgtgaggcctattagtggattaaccattgtt |
48792022 |
T |
|
| Q |
107 |
gttgatcttggactacagaaaattgttgaatatcatgacagagaaattgaaactgtgcctacagctgaaaacactgaatatcaggtttcaaaacaaagcc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48792021 |
gttgatcttggactacagaaaattgttgaatatcatgacagagaaattgaaactgtgcctacagctgaaaacactgaatatcaggtttcaaaacaaagcc |
48791922 |
T |
|
| Q |
207 |
caccatttg |
215 |
Q |
| |
|
||||||||| |
|
|
| T |
48791921 |
caccatttg |
48791913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 15827593 - 15827385
Alignment:
| Q |
7 |
tggagaagcagagagtaaaaggactgtgagagttgactgttttatgaaagaaaacagtgttaatatatatgttaggcctattagtggattaaccattgtt |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | | ||| |||||||||||||||||||| || ||| |
|
|
| T |
15827593 |
tggagaagaagagagtaaaaggactgtgagagttgattgttttatgaaagaaaacactgttaatttttttgtgaggcctattagtggattaacaatggtt |
15827494 |
T |
|
| Q |
107 |
gttgatcttggactacagaaaattgttgaatatcatgacagagaaattgaaactgtgcctacagctgaaaacactgaatatcaggtttcaaaacaaagcc |
206 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||| ||||| |||||||||||| ||| |||||||||||| | |
|
|
| T |
15827493 |
gctgatcttggactcatgaaaattgttgaatatcatgatagagaagttgaagttgtgcctacggctgagaacactgaatataaggcttcaaaacaaagac |
15827394 |
T |
|
| Q |
207 |
caccatttg |
215 |
Q |
| |
|
| ||||||| |
|
|
| T |
15827393 |
ctccatttg |
15827385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 7 - 215
Target Start/End: Original strand, 48833272 - 48833480
Alignment:
| Q |
7 |
tggagaagcagagagtaaaaggactgtgagagttgactgttttatgaaagaaaacagtgttaatatatatgttaggcctattagtggattaaccattgtt |
106 |
Q |
| |
|
||||||| |||||||| |||||||||||| ||||||| ||||||||||||| | ||| ||||| ||||| |||||||||||||||||||| |||||| |
|
|
| T |
48833272 |
tggagaaaaagagagtagaaggactgtgaggattgactgctttatgaaagaaagtactgtaaatatttatgtgaggcctattagtggattaacaattgtt |
48833371 |
T |
|
| Q |
107 |
gttgatcttggactacagaaaattgttgaatatcatgacagagaaattgaaactgtgcctacagctgaaaacactgaatatcaggtttcaaaacaaagcc |
206 |
Q |
| |
|
||||||||||| | |||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| || |
|
|
| T |
48833372 |
gttgatcttggtcgtatgaaaattgttgagtatcatgacagggaaattgaaactgtgcctacagctgagaacaatgaatatcaggtttcaaaacaaaacc |
48833471 |
T |
|
| Q |
207 |
caccatttg |
215 |
Q |
| |
|
||||||||| |
|
|
| T |
48833472 |
caccatttg |
48833480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 48817669 - 48817461
Alignment:
| Q |
7 |
tggagaagcagagagtaaaaggactgtgagagttgactgttttatgaaagaaaacagtgttaatatatatgttaggcctattagtggattaaccattgtt |
106 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| | ||||| || |
|
|
| T |
48817669 |
tggagaaaaagagaatagaaggactgtgagagttgactgttttatgaaagaaagtactgttaatatatatgttaggcctattactggaatcaccatggtg |
48817570 |
T |
|
| Q |
107 |
gttgatcttggactacagaaaattgttgaatatcatgacagagaaattgaaactgtgcctacagctgaaaacactgaatatcaggtttcaaaacaaagcc |
206 |
Q |
| |
|
| ||||||| | ||| |||||||||||| || ||||| ||||| ||||| | |||||||| ||||| || ||||| || ||||||||||||||| | |
|
|
| T |
48817569 |
gctgatcttagtctaatgaaaattgttgagtaccatgatagagatgttgaagcagtgcctactgctgagaatactgattacagggtttcaaaacaaagtc |
48817470 |
T |
|
| Q |
207 |
caccatttg |
215 |
Q |
| |
|
||||||||| |
|
|
| T |
48817469 |
caccatttg |
48817461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 40845640 - 40845799
Alignment:
| Q |
26 |
aggactgtgagagttgactgttttatgaaagaaaacagtgttaatatatatgttaggcctattagtggattaaccattgttgttgatcttggactacaga |
125 |
Q |
| |
|
||||||||||| | ||||| || ||||||||||||| || |||||||||||||||||||||| |||| | | |||||||||||||||| ||| || |
|
|
| T |
40845640 |
aggactgtgaggttagactgcttaatgaaagaaaacactgccaatatatatgttaggcctattactggaattaaaattgttgttgatcttgaacttatga |
40845739 |
T |
|
| Q |
126 |
aaattgttgaatatcatgacagagaaattgaaactgtgcctacagctgaaaacactgaat |
185 |
Q |
| |
|
| |||||||| |||||||| |||| |||||| |||||||||| | ||| ||||| |||| |
|
|
| T |
40845740 |
agattgttgagtatcatgatagagttattgaagctgtgcctacggatgagaacacagaat |
40845799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University