View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8522_low_35 (Length: 219)
Name: NF8522_low_35
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8522_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 14193182 - 14193370
Alignment:
| Q |
13 |
agctaggaatcccggtgttgaatgtcaaggaaacaacggaagtgaggtggaggaatttgattgcttgggagcagagcaaaattaacattaaatgcaaata |
112 |
Q |
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| T |
14193182 |
agctacgaatcccggtgttgaatttcaaggaaacaacggaagtgaggtggaggaatttgattgcttgggagcagagcaaaattaacattagatgcaaata |
14193281 |
T |
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| Q |
113 |
tacatcctatgctcttttcttcaaaggtttgatatgctgtgaatctgacattggattgcttcaagaaacaggggttatagtactggatg |
201 |
Q |
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| T |
14193282 |
tacatcctatgctcttttcttcaaaggtttgatatgctgtgaatctgacattggattgcttcaagaaaaaggggttatagtactggatg |
14193370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 18521891 - 18522010
Alignment:
| Q |
29 |
gttgaatgtcaaggaaacaacggaagtgaggtggaggaatttgattgcttgggagcagagcaaaattaacattaaatgcaaatatacatcctatgctctt |
128 |
Q |
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| T |
18521891 |
gttgtatgttaaggaaacaacggaagtgaagtggaggaatttgattgcttgggaacagaatagaatttgggtaagatgcaaatacacttcatatgctcta |
18521990 |
T |
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| Q |
129 |
ttcttcaaaggtttgatatg |
148 |
Q |
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| T |
18521991 |
ttcttcaatggtttgatatg |
18522010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 42 - 175
Target Start/End: Original strand, 4591407 - 4591540
Alignment:
| Q |
42 |
gaaacaacggaagtgaggtggaggaatttgattgcttgggagcagagcaaaattaacattaaatgcaaatatacatcctatgctcttttcttcaaaggtt |
141 |
Q |
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| T |
4591407 |
gaaacaacggaagtgaagtggaggaatttgattgcttgggagcaaagcaaaaattggattagatgcaaatacacatcctatgcacttttctttaatggtt |
4591506 |
T |
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| Q |
142 |
tgatatgctgtgaatctgacattggattgcttca |
175 |
Q |
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| T |
4591507 |
tgatatgttgtgaacatgacattgaattgcttca |
4591540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 4555103 - 4555254
Alignment:
| Q |
39 |
aaggaaacaacggaagtgaggtggaggaatttgattgcttgggagcagagcaaaattaacattaaatgcaaatatacatcctatgctcttttcttcaaag |
138 |
Q |
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| T |
4555103 |
aaggaaagaacggaagtgaagtggaggaatttgattgcttgggagcaaagcaaaatttggagtaaatgcaaatacacttcctatgcacttttctttaatg |
4555202 |
T |
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| Q |
139 |
gtttgatatgctgtgaatctgacattggattgcttcaagaaacaggggttat |
190 |
Q |
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| T |
4555203 |
gtttgatatgttgtgagcatgacattgaaatgcttcaggaaaaaggggttat |
4555254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 4620934 - 4621077
Alignment:
| Q |
37 |
tcaaggaaacaacggaagtgaggtggaggaatttgattgcttgggagcagagcaaaattaacattaaatgcaaatatacatcctatgctcttttcttcaa |
136 |
Q |
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| T |
4620934 |
tcaaggaaacaactgaagttaagtggaggaatttgattgcttgggagcaaagcaaaatttggattagatgcaaatgcacttcttatgcactttttttcaa |
4621033 |
T |
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| Q |
137 |
aggtttgatatgctgtgaatctgacattggattgcttcaagaaa |
180 |
Q |
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| T |
4621034 |
tggtttgatatgctgtgagcatgacattgaattacttcaagaaa |
4621077 |
T |
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