View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8522_low_36 (Length: 218)
Name: NF8522_low_36
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8522_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 32583309 - 32583493
Alignment:
| Q |
17 |
aaaacaatcaaataactaagatatcaacaaaagaagacatgcctgctctaacaagtgcctcccacaactcctccggcaaaatgccaccattatgttcaac |
116 |
Q |
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| T |
32583309 |
aaaacaatcaaataactaagatatcaacaaaagaagacatgcctgctctaacaagtgcctcccacaactcctccggcaaaatgccaccattatgttcaac |
32583408 |
T |
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| Q |
117 |
atcaatagcctgaaaaatccgataaagctcaagctctttatcatccatatacttcttaaactcaacaaaatcaacacgtccatct |
201 |
Q |
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| T |
32583409 |
atcaatagcctgaaaaatccgataaagctcaagctctttatcatccatatacttcttaaactcaacaaaatcaacacgtccatct |
32583493 |
T |
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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 40065183 - 40065249
Alignment:
| Q |
102 |
accattatgttcaacatcaatagcctgaaaaatccgataaagctcaagctctttatcatccatatac |
168 |
Q |
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| T |
40065183 |
accattatgttcaacatcaatagcttgaaaaattctataaagttcaagttctttatcatccatatac |
40065249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 44959017 - 44959095
Alignment:
| Q |
102 |
accattatgttcaacatcaatagcctgaaaaatccgataaagctcaagctctttatcatccatatacttcttaaactca |
180 |
Q |
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|||| ||||||||||||||||||| |||||||| | |||||| || | || |||||||||||||| || |||||||| |
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| T |
44959017 |
accactatgttcaacatcaatagcttgaaaaatacaataaagttccaattccttatcatccatatatctcctaaactca |
44959095 |
T |
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