View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8522_low_4 (Length: 620)
Name: NF8522_low_4
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8522_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 102 - 603
Target Start/End: Complemental strand, 5303292 - 5302799
Alignment:
| Q |
102 |
aagaaagagatctgatggctgaaggtctgatcaggttggtgtct----gcccatgcaagccaacagatttataccagagctacaaacacctaaattttat |
197 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
5303292 |
aagaaagagatctgatggctaaaggtctgatcaggttggtgtctatctgcccatgcaagcgaacagatttataccaatgctacaaacacctaaattttat |
5303193 |
T |
|
| Q |
198 |
accactcatatatagtttaatgttgtattcatcgatatttgtcgaggatgactctgatgaagtaattttcttattgctaaattgatgtcttaa-tgtttt |
296 |
Q |
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|||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5303192 |
accactcata----gttta-tgttgtattgatcgatatttgtcgaggatgactctgatgaagtaattttcttattgctaaattgatgtcttaaatgtttt |
5303098 |
T |
|
| Q |
297 |
cttctctttttggttgctggtaattaatatatttgaattacatacatctcatcatttttctttattcagccaccatctaattgcttcacatgtccaaacc |
396 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5303097 |
cttctctttttggttgctggtaat----atatttgacttacatacatctcatcatttttctttattcagccaccatctaattgcttcacatgtccaaacc |
5303002 |
T |
|
| Q |
397 |
aaatcatctaagtccaaattcattagtattaattttctgggtgaagttgagaaaacttttagttcaacccacctaaattgaaattcaactgtannnnnnn |
496 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5303001 |
aaatcatctaagtccaaattcattagt----attttctgggtgaagttgagaaaacttttagttcaacccacctaaattgaaattcaactgtattttttt |
5302906 |
T |
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| Q |
497 |
attaagaggtttttagacctatcgttgcctcagtattaacttcatctttctccagttgattatctcttcccacacccgcagcagcactatagccattcac |
596 |
Q |
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| T |
5302905 |
agtaagaggtttttagacctatcgttgcctcagtattagcttcatctttctccagttgattatctcttcccacacccacagcagcactatagccattcac |
5302806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 102 - 489
Target Start/End: Complemental strand, 54728899 - 54728522
Alignment:
| Q |
102 |
aagaaagagatctgatggctgaaggtctgatcaggttggtgtct----gcccatgcaagccaacagatttataccagagctacaaacacctaaattttat |
197 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54728899 |
aagaaagagctctgatggctaaaggtctgatcaggttggtgtctatctgcccatgcaagccaacagatttataccagagctacaaacacctaaattttat |
54728800 |
T |
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| Q |
198 |
accactcatatatagtttaatgttgtattcatcgatatttgtcgaggatgactctgatgaagtaattttcttattgctaaattgatgtcttaatgttttc |
297 |
Q |
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|||||||||| ||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54728799 |
accactcata----gttta-tgttgtattgatctatatttgtcgaggatgactctgatgaagtaattttcttattgctaaattgatgtcttaatgttttc |
54728705 |
T |
|
| Q |
298 |
ttctctttttggttgctggtaattaatatatttgaattacatacatctcatcatttttctttattcagccaccatctaattgcttcacatgtccaaacca |
397 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54728704 |
ttctctttttggttgctg-----taatatatttgacttacatacatctcatcatttttctttattcagccaccatctaattgcttcacatgtccaaacca |
54728610 |
T |
|
| Q |
398 |
aatcatctaagtccaaattcattagtattaattttctgggtgaagttgagaaaacttttagttcaacccacctaaattgaaattcaactgta |
489 |
Q |
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| T |
54728609 |
aatcatctaagttcaaattcattagt----attttctgggtgaagttgagaaaacttttagttcaacccacctaaattgaaattcaactgta |
54728522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 509 - 599
Target Start/End: Complemental strand, 54728230 - 54728140
Alignment:
| Q |
509 |
ttagacctatcgttgcctcagtattaacttcatctttctccagttgattatctcttcccacacccgcagcagcactatagccattcacaaa |
599 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
54728230 |
ttagacctatcgttgcctcagtattagcttcatctttctccagttgattatctcttcccacacccgcagcaacactatagccattcacaaa |
54728140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 26588599 - 26588524
Alignment:
| Q |
114 |
tgatggctgaaggtctgatcaggttggtgtctgcccatgcaagccaacagatttataccagagctacaaacaccta |
189 |
Q |
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|||||||| ||||| | ||||||||||||||||| ||| |||| || |||||||| ||||| |||||||||||||| |
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| T |
26588599 |
tgatggctaaaggtttaatcaggttggtgtctgctcattcaagtcagcagatttacaccagggctacaaacaccta |
26588524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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