View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8522_low_6 (Length: 512)
Name: NF8522_low_6
Description: NF8522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8522_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 3 - 499
Target Start/End: Original strand, 5396683 - 5397167
Alignment:
| Q |
3 |
tggtgggtagattattcttgatatttgctggatgtgctgctgtggtggtgaaccttaacaaggataaagttgtcacacttcctggaatatcaattgtttg |
102 |
Q |
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||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
5396683 |
tggtgggaacattcttcttgatatttgctggatgtgctgctgtggtggtgaaccttaacaatgataaagttgtgacacttcctggaatatcaattgtttg |
5396782 |
T |
|
| Q |
103 |
gggacttgctgttatggtattggtctattctattggtcatatatctggtgctcatttcaatcccgctgtcaccattgctcacactaccaccggaaggttt |
202 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5396783 |
gggacttgctgttatggtattagtctattctataggtcatatctctggtgctcatttcaatcccgctgtcaccattgctcacaccaccaccggaaggttt |
5396882 |
T |
|
| Q |
203 |
ccattgaagcaggtaaattacaaaacacaagcactataattcatattaagacaaacataattttcacactgtctcttaagttatttgatcggaggtgatc |
302 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||| |
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| T |
5396883 |
ccattgaagcaggtgaattacaaaacacaagcactataattcatattaagacaaacatagtttttacaccgtctcttaagttatttgatcggaggtgatc |
5396982 |
T |
|
| Q |
303 |
agaagaactgcactcagacgctcaaatctgtatgagagccaagagttttgaatttttggagttagaagattgtaccttggaggacatgggatgtactctt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5396983 |
agaagaactgcactcagacgctcaaatctgtatgagagccaagagttttgaatttttggagttagaagattgtaccttggaggacatgggatgtactctt |
5397082 |
T |
|
| Q |
403 |
ttatagttgagaaaataggatcctcagagtaatggttggagagccatttgctgaagattatagacgatggggtctgtaacaatcgaacattgcattt |
499 |
Q |
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| T |
5397083 |
ttatagttga------------ctcagagtaatggttggagagccatttgctgaagattatagacgatggggtctgtaacaatcgaacattgcattt |
5397167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 5408081 - 5407794
Alignment:
| Q |
17 |
ttcttgatatttgctggatgtgctgctgtggtggtgaaccttaacaaggataaagttgtcacacttcctggaatatcaattgtttggggacttgctgtta |
116 |
Q |
| |
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|||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||| ||||| |
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| T |
5408081 |
ttcttgatatttgctggatgtggttctgtggtggtgaaccttaacaatgataaagttgtgacacttcctggaattgcaattgtttggggacttgttgtta |
5407982 |
T |
|
| Q |
117 |
tggtattggtctattctattggtcatatatctggtgctcatttcaatcccgctgtcaccattgctcacactaccaccggaaggtttccattgaagcaggt |
216 |
Q |
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||||||| ||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5407981 |
tggtattagtctattctataggtcatatctctggtgcccatttcaatcccgcggtcaccattgctcacactacaaccggaaggtttccattgaagcaggt |
5407882 |
T |
|
| Q |
217 |
aaattacaaaacacaagcactataattcatattaagacaaacataattttcacactgtctcttaagttatttgatcggaggtgatcagaagaac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| | |||||||| |
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| T |
5407881 |
aaattacaaaacacaagcactataattcatattaagacaaacataagtttc------tctcttaagttatttgagcggaggtggttagaagaac |
5407794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 5388588 - 5388754
Alignment:
| Q |
17 |
ttcttgatatttgctggatgtgctgctgtggtggtgaaccttaacaaggataaagttgtcacacttcctggaatatcaattgtttggggacttgctgtta |
116 |
Q |
| |
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|||||||||||||| || ||||||||||| |||||||| ||| |||| || ||||| || |||| |||||| || |||||||||||||| || |||||| |
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| T |
5388588 |
ttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaacacatcctgggatctcaattgtttggggcctcactgtta |
5388687 |
T |
|
| Q |
117 |
tggtattggtctattctattggtcatatatctggtgctcatttcaatcccgctgtcaccattgctca |
183 |
Q |
| |
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|||| ||||| || ||| ||||||| || ||||||||||||||||| || ||||||||||||||||| |
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| T |
5388688 |
tggttttggtttactctgttggtcacatctctggtgctcatttcaaccctgctgtcaccattgctca |
5388754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 5402397 - 5402563
Alignment:
| Q |
17 |
ttcttgatatttgctggatgtgctgctgtggtggtgaaccttaacaaggataaagttgtcacacttcctggaatatcaattgtttggggacttgctgtta |
116 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||| ||| |||| || ||||| || |||| |||||| || |||||||||||||| || |||||| |
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| T |
5402397 |
ttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaacacatcctgggatctcaattgtttggggcctcactgtta |
5402496 |
T |
|
| Q |
117 |
tggtattggtctattctattggtcatatatctggtgctcatttcaatcccgctgtcaccattgctca |
183 |
Q |
| |
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|||| ||||| || ||| ||||||| || ||||||||||||||||| || ||||||||||||||||| |
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| T |
5402497 |
tggttttggtttactctgttggtcacatctctggtgctcatttcaaccctgctgtcaccattgctca |
5402563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 5415136 - 5415296
Alignment:
| Q |
21 |
tgatatttgctggatgtgctgctgtggtggtgaaccttaacaaggataaagttgtcacacttcctggaatatcaattgtttggggacttgctgttatggt |
120 |
Q |
| |
|
|||||||||| || ||||||||||| | ||||| |||||||| ||| | || || |||||||||||||| || ||| ||||||| | |||||||||| |
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| T |
5415136 |
tgatatttgcgggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaacacttcctggaattgcatttgcttggggattcactgttatggt |
5415235 |
T |
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| Q |
121 |
attggtctattctattggtcatatatctggtgctcatttcaatcccgctgtcaccattgct |
181 |
Q |
| |
|
||| | || ||| ||||||| || ||||||||||||||||| || ||||| ||||||||| |
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|
| T |
5415236 |
tttgatttactctgttggtcacatttctggtgctcatttcaaccctgctgttaccattgct |
5415296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 36267583 - 36267747
Alignment:
| Q |
17 |
ttcttgatatttgctggatgtgctgctgtggtggtgaaccttaacaaggataaagttgtcacacttcctggaatatcaattgtttggggacttgctgtta |
116 |
Q |
| |
|
|||||||||||||| || |||||| | ||| |||||||| ||||| || || ||||| |||||||||||||| ||||||||||||||||||||||| | |
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| T |
36267583 |
ttcttgatatttgccggttgtgcttcggtgttggtgaacaagaacaatgaaaatgttgtaacacttcctggaatttcaattgtttggggacttgctgtga |
36267682 |
T |
|
| Q |
117 |
tggtattggtctattctattggtcatatatctggtgctcatttcaatcccgctgtcaccattgct |
181 |
Q |
| |
|
|||| |||| || ||| ||||||| || |||||||||||||||||||| || || ||||||||| |
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|
| T |
36267683 |
tggtgctggtttactctcttggtcacatctctggtgctcatttcaatcctgcagttaccattgct |
36267747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 36262498 - 36262586
Alignment:
| Q |
93 |
caattgtttggggacttgctgttatggtattggtctattctattggtcatatatctggtgctcatttcaatcccgctgtcaccattgct |
181 |
Q |
| |
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|||||||||||||||| || | |||||||| | || ||| |||||||||| |||||||||||||||||||| ||||| || |||||| |
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| T |
36262498 |
caattgtttggggactaactttgttggtattgatttactctcttggtcatatctctggtgctcatttcaatcctgctgttactattgct |
36262586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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