View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8523_high_1 (Length: 403)
Name: NF8523_high_1
Description: NF8523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8523_high_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 403
Target Start/End: Complemental strand, 44730380 - 44729974
Alignment:
| Q |
13 |
ttaacaaacatcacttctcattgcatacattaccttgttttaca----------------tcaacaccttgtattgactcataacaatatcctcttatgg |
96 |
Q |
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| T |
44730380 |
ttaacaaacatcacttctcattgcatacattaccttgttttacacaccttttgtctcacatcaacaccttgtattggctcataacaatatcctcttatgg |
44730281 |
T |
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| Q |
97 |
gaaaccatatctcatttcatgccacaaccaaaatcatttactatgatggttcagttcaagaatttgatcaaccaataacagtagcagagcttatgttaga |
196 |
Q |
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| T |
44730280 |
gaaaccatatctcatttcatgccacaaccaaaatcatttactatgatggttcagttcaagaatttgatcaaccaataacagtagcagagcttatgttaga |
44730181 |
T |
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| Q |
197 |
tcacccaaaacatgttgttgttgagtttcattcagcaatgaaccagaaaaaaccaacacctttaccagctgacaagaacctagaaatgaacaaaaaatat |
296 |
Q |
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| T |
44730180 |
tcacccaaaacatgttgttgttgagtttcattcagcaatgaaccagaaaaaaccaacacctttaccagctgacaagaacctagaaatgaacaaaaaatat |
44730081 |
T |
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| Q |
297 |
gtcatggttccaatgaaaccagggaagcctgtcggattaagcgccgaagattgtcgtcgaattctttcgatcgctaactcagctcttaataccaataatt |
396 |
Q |
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| T |
44730080 |
gtcatggttccaatgaaaccagggaagcctgtcggattaagcgccgaagattgtagtcgaattctttcgatcgctaactcagctcttaataccaataatt |
44729981 |
T |
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| Q |
397 |
atctcat |
403 |
Q |
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| T |
44729980 |
atctcat |
44729974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 141 - 346
Target Start/End: Original strand, 39083839 - 39084044
Alignment:
| Q |
141 |
gatggttcagttcaagaatttgatcaaccaataacagtagcagagcttatgttagatcacccaaaacatgttgttgttgagtttcattcagcaatgaacc |
240 |
Q |
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|||||||||||||| ||||||||| || |||||||||| |||||| | ||| | ||||| ||| || | || || ||||||||||||||||| |||||| |
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| T |
39083839 |
gatggttcagttcatgaatttgatgaagcaataacagtggcagagttaatgatggatcatccacaaaaagtagtagttgagtttcattcagctgtgaacc |
39083938 |
T |
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| Q |
241 |
agaaaaaaccaacacctttaccagctgacaagaacctagaaatgaacaaaaaatatgtcatggttccaatgaaaccagggaagcctgtcggattaagcgc |
340 |
Q |
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| T |
39083939 |
aaaaaagaccaacaccattacctgctgacaagaagctagatatgaacaagatatatttgatgcttccagtgaagcaagggaagcctattggtttaagcgg |
39084038 |
T |
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| Q |
341 |
cgaaga |
346 |
Q |
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|||||| |
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| T |
39084039 |
cgaaga |
39084044 |
T |
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