View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8523_high_3 (Length: 365)
Name: NF8523_high_3
Description: NF8523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8523_high_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 15 - 365
Target Start/End: Original strand, 7666607 - 7666957
Alignment:
| Q |
15 |
gaaacatcaaaaatcatcaatgaaggattattcaaatttggaatattaccactaaactgannnnnnncaagatgtaattcaacaagttgaggaatctcag |
114 |
Q |
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| T |
7666607 |
gaaacatcaaaaatcatcaatgaaggattattcaaatttggaatattaccactaaactgatttttttcaagatgtaattcaacaagttgaggaatctcag |
7666706 |
T |
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| Q |
115 |
ccaatgatgatggaatatcacctgtaaattcattattagataaccaaactttcttcaatgatttcattctttgaaaatattccttaggaatatgtcctga |
214 |
Q |
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| T |
7666707 |
ccaatgatgatggaatatcacctgtaaattcattattagataaccaaactttcttcaatgatttcattctttgaaaatattccttaggaatatgtcctga |
7666806 |
T |
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| Q |
215 |
aaatttatttcccgacaaaaacatcgctttcaagaaaccgattcgattcaattctggtatcgaaccagtgaaagaattgttcataagactaatagttctt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
7666807 |
aaatttatttcccgacaaaaacatcgctttcaagaaaccgattcgattcaattctggtatcgaaccagtgaaagaattgttcatgaaactaatagttctt |
7666906 |
T |
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| Q |
315 |
aaacccttaagttcaagcaatgcatcaacatcaattttgccgaataatccc |
365 |
Q |
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| T |
7666907 |
aaacccttaagttcaagcaatgcatcaacatcaattttgccgaataatccc |
7666957 |
T |
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