View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8523_low_1 (Length: 563)
Name: NF8523_low_1
Description: NF8523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8523_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 36288732 - 36288279
Alignment:
| Q |
1 |
atttgaggttgtgtttgatccatagctgtcatgatgagtggacctaaagagaaagagacatctgaagtggtttcagcgccaaagggtaggccttcaatgt |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36288732 |
atttgaggttttgtttgatccatagctgtcatgatgagtggacctaaagagaaagagacatctgaagtggtttcagcgccaaagggtaggccttcaatgt |
36288633 |
T |
|
| Q |
101 |
gaggaacattgagagggtaaaaggtgataaggtttgggtaaaggttgaatttttctaacttggtttgtgttttcttggggatgaagaaagagattt-gtg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
36288632 |
gaggaacattgagagggtaaaaggtgataaggtttgggtaaaggttgaatttttctaacttggtttgtgttttcttggggatgaagaaagaggttttgtc |
36288533 |
T |
|
| Q |
200 |
tccctttttggctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatgtgcaaagaagaatgtggatcc |
299 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36288532 |
tccctttttggctaatatgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggagacattgctatgtgcaaagaagaatgtggatcc |
36288433 |
T |
|
| Q |
300 |
atggctgctattttctgaattacttggcaatgtctctctgcttataaggtctatataaaatatagggggattctggctcctatagcataatctacaaaac |
399 |
Q |
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| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36288432 |
aaggctgctattttctgaattacttggcaatatctctctgcttataaggtctatataaaatacagggggattctggctcctatagcataatctacaaaac |
36288333 |
T |
|
| Q |
400 |
aataaaattattaagcatataataatcacaactatcctttgaaattattggatt |
453 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36288332 |
aataaaattattaagcatataataatcacaactatcctttgaaattattggatt |
36288279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 3 - 430
Target Start/End: Original strand, 35036755 - 35037179
Alignment:
| Q |
3 |
ttgaggttgtgtttgatccatagctgtcatgatgagtggacctaaagagaaagagacatctgaagtggtttcagcgccaaagggtaggccttcaatgtga |
102 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || || || | ||||||| |
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| T |
35036755 |
ttgaggctgtgtttgatccatagctgtcatgatgagtggacctaaagagaatgagacatctgaagtggtttcagcaccaaatggaagaccatgaatgtga |
35036854 |
T |
|
| Q |
103 |
ggaacattgagagggtaaaaggtgataaggtttgggtaaaggttgaatttttctaacttggtttgtgttttcttggggatgaagaaagaga-tttgtgtc |
201 |
Q |
| |
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|||||||||||||||||||| ||||| || ||||| ||||||||||||| |||||| ||||||||||||||| |||| ||||||||||||| |||||||| |
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| T |
35036855 |
ggaacattgagagggtaaaaagtgatgagatttggataaaggttgaattgttctaatttggtttgtgttttcgtgggaatgaagaaagagattttgtgtc |
35036954 |
T |
|
| Q |
202 |
cctttttggctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatgtgcaaagaagaatgtggatccat |
301 |
Q |
| |
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|| |||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
35036955 |
cccttttggctaatttgtttgagagatgaagatatggagttaagtgtcccattgcaaaccatggaaacattgctatgtgcaaagaagatggtgactccat |
35037054 |
T |
|
| Q |
302 |
ggctgctattttctgaattacttggcaatgtctctctgcttataaggtctatataaaatatagggggattctggctcctatagcataatctacaaaacaa |
401 |
Q |
| |
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||||||| || |||||| ||||| ||||||| |||||||||||||||||||||||||||| || || ||||||| || ||||||| |||||||||||| |
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| T |
35037055 |
ggctgct-ttgtctgaactacttagcaatgtttctctgcttataaggtctatataaaataaagaggaattctggatc---tagcatactctacaaaacaa |
35037150 |
T |
|
| Q |
402 |
taaaattattaagcatataataatcacaa |
430 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
35037151 |
taaaaaaattaagcatataataatcacaa |
35037179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 3 - 306
Target Start/End: Complemental strand, 35009178 - 35008874
Alignment:
| Q |
3 |
ttgaggttgtgtttgatccatagctgtcatgatgagtggacctaaagagaaagagacatctgaagtggtttcagcgccaaagggtaggccttcaatgtga |
102 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || || || | ||| ||| |
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| T |
35009178 |
ttgaggttgagtttgatccatagctgtcatgatgagtggacctaaagagaatgagacatctgaagtggtttcagcaccaaatggaagaccatgaatatga |
35009079 |
T |
|
| Q |
103 |
ggaacattgagagggtaaaaggtgataaggtttgggtaaaggttgaatttttctaacttggtttgtgttttcttggggatgaagaaagaga-tttgtgtc |
201 |
Q |
| |
|
|||||||||||||||||||| ||||| | ||||| ||||||||||||| |||||| |||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
35009078 |
ggaacattgagagggtaaaaagtgattaaatttggataaaggttgaattgttctaatttggtttgtgttttcttgggaatgaagaaagagattttgtgtc |
35008979 |
T |
|
| Q |
202 |
cctttttggctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatgtgcaaagaagaatgtggatccat |
301 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
35008978 |
cccttttggctaatttgtttgagagatgaagatatggagttaagtgtcccattgcaaaccatggaaacattgctatgtgcaaagaagatggtgactccat |
35008879 |
T |
|
| Q |
302 |
ggctg |
306 |
Q |
| |
|
||||| |
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|
| T |
35008878 |
ggctg |
35008874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 58 - 285
Target Start/End: Complemental strand, 35026387 - 35026159
Alignment:
| Q |
58 |
acatctgaagtggtttcagcgccaaagggtaggccttcaatgtgaggaacattgagagggtaaaaggtgataaggtttgggtaaaggttgaatttttcta |
157 |
Q |
| |
|
|||||||||| |||||||| ||| ||| || || ||||||||||||||||||||||||||||| ||||| || ||||||| ||||||| | || || |
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|
| T |
35026387 |
acatctgaagatgtttcagcaccatcgggaagaccatcaatgtgaggaacattgagagggtaaaaagtgatgagatttgggtttaggttgagatgttgta |
35026288 |
T |
|
| Q |
158 |
acttggtttgtgttttcttggggatgaagaaagaga-tttgtgtccctttttggctaatttgtttgagaggtgaagatatggaattaggtgtcccattgc |
256 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || | |||||| || ||||| ||||||||||| ||||||||||||||||| | | ||||||||| || |
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| T |
35026287 |
acttggtttgtgtttttttggggatgaagaatgatattttgtgacctttttttgctaatttgttggagaggtgaagatatggggtgaagtgtcccatagc |
35026188 |
T |
|
| Q |
257 |
aaaccatggaaacattgctatgtgcaaag |
285 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
35026187 |
aaaccatggaaacattgctatgtgcaaag |
35026159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 210 - 311
Target Start/End: Original strand, 35019417 - 35019518
Alignment:
| Q |
210 |
gctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatgtgcaaagaagaatgtggatccatggctgcta |
309 |
Q |
| |
|
||||||||||| |||| ||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |||| | | |||||| |||||| |
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| T |
35019417 |
gctaatttgttggagaagtgaagatatggagttaagtgtcccatagcaaaccatggaaacattgctatgtgcaaaggagaaggagcatccattactgcta |
35019516 |
T |
|
| Q |
310 |
tt |
311 |
Q |
| |
|
|| |
|
|
| T |
35019517 |
tt |
35019518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 210 - 285
Target Start/End: Complemental strand, 35033243 - 35033168
Alignment:
| Q |
210 |
gctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatgtgcaaag |
285 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| |||| |
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| T |
35033243 |
gctaacttgtttgagaggtgaagatatggagttaagtgtcccatagcaaaccatggaaacattgctatgtgtaaag |
35033168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 34998904 - 34998978
Alignment:
| Q |
211 |
ctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatgtgcaaag |
285 |
Q |
| |
|
|||||||||| |||||| | | | ||||| || ||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
34998904 |
ctaatttgttagagaggcggataaatggagttgagtgtcccatagcaaaccatggaaacattgctatgtgcaaag |
34998978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 309
Target Start/End: Original strand, 35012391 - 35012490
Alignment:
| Q |
210 |
gctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatgtgcaaagaagaatgtggatccatggctgcta |
309 |
Q |
| |
|
|||||||||||||||| ||| |||||||| | | |||||||| ||||||||||||||||||| ||| |||| || || | | | |||||||||||||| |
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| T |
35012391 |
gctaatttgtttgagaagtggagatatggggtgaaatgtcccatagcaaaccatggaaacattgatatatgcataggaggaagagcatccatggctgcta |
35012490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 285
Target Start/End: Original strand, 30595238 - 30595329
Alignment:
| Q |
194 |
tttgtgtccctttttggctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatgtgcaaag |
285 |
Q |
| |
|
|||||| || ||||| |||| |||||||| || ||||| ||||| || |||| |||||||||||||||||| ||||||||||||| |||| |
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| T |
30595238 |
tttgtgacctttttttgctagtttgtttgctagatgaaggaatggagtttggtggcccattgcaaaccatggatacattgctatgtgtaaag |
30595329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 285
Target Start/End: Original strand, 30612586 - 30612677
Alignment:
| Q |
194 |
tttgtgtccctttttggctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatgtgcaaag |
285 |
Q |
| |
|
|||||| || ||||| |||| |||||||| || ||||| ||||| || |||| |||||||||||||||||| ||||||||||||| |||| |
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|
| T |
30612586 |
tttgtgacctttttttgctagtttgtttgctagatgaaggaatggagtttggtggcccattgcaaaccatggatacattgctatgtgtaaag |
30612677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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