View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8523_low_10 (Length: 271)
Name: NF8523_low_10
Description: NF8523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8523_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 32324397 - 32324150
Alignment:
| Q |
20 |
taattaccatgctaaatcactattttt-ataagggtactgatttttaaataataatggttagtatcatcttatgccttgtttaattaacaaataaattta |
118 |
Q |
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| T |
32324397 |
taattaccatgctaaatcactattttttataagggtactgatttttaaataataatggttagtatcatcttatgccttgtttaattaacaaataaattaa |
32324298 |
T |
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| Q |
119 |
aaaaacatattttatttatatttgaagtaaaatactaattacatgtctgccaaaactacaatgaacgacaataattttgcaaaaactatat--------- |
209 |
Q |
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| T |
32324297 |
aaaaacatattttatttatatttgaagtaaaatactaattacatgtctgccaaaaccacaatgaaccataataattttgcaaaaactatattgcgttaag |
32324198 |
T |
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| Q |
210 |
-ttcataagatagtttttgtaaaatcatcgtggctcactataattcat |
256 |
Q |
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| T |
32324197 |
atacataagatagtttttctaaaatcatcgtggctcactataattcat |
32324150 |
T |
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