View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8523_low_11 (Length: 259)
Name: NF8523_low_11
Description: NF8523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8523_low_11 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 3249296 - 3249536
Alignment:
| Q |
19 |
cagagaccttgcccaacatgtcagcttcaacctgtttcttgccattcaaatcatttctggttttcaatttgacaggtccttcagtgttgtttgatccatt |
118 |
Q |
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| T |
3249296 |
cagagaccttgcccaacatgtcagcatcaacctgtttcttgccattcaaatcatttttggttttcaatttgacaggtccttcagtgttgtttgatccatt |
3249395 |
T |
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| Q |
119 |
caatttcctacaatcacatgcacattaagtcgtgaattattttcattagtgttgtctccttccttgcattagtagtaaattcttttcaatcaatcaatag |
218 |
Q |
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| T |
3249396 |
caatttcctacaatcacatgcacattaagtcgtgaattattttcattagtgttgtctccttccttgcattagtagtaaattcttttcaatcaatcaatag |
3249495 |
T |
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| Q |
219 |
tactgtactgtttatatgtataagccaagcacaggaagtta |
259 |
Q |
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| T |
3249496 |
tactgtactgtttatatgtataagccaagcacaggaagtta |
3249536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 36905334 - 36905221
Alignment:
| Q |
19 |
cagagaccttgcccaacatgtcagcttcaacctgtttcttgccattcaaatcatttctggttttcaatttgacaggtccttcagtgttgtttgatccatt |
118 |
Q |
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|||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36905334 |
cagataccttgcccaacatgacagcatcaacctgtttcttgccattcaaatcatttctggttttcaatttgacagatccttcagtgttgtttgatccatt |
36905235 |
T |
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| Q |
119 |
caatttcctacaat |
132 |
Q |
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| T |
36905234 |
cagtttcctacaat |
36905221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 3243408 - 3243455
Alignment:
| Q |
150 |
gtgaattattttcattagtgttgtctccttccttgcattagtagtaaa |
197 |
Q |
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| T |
3243408 |
gtgaattattctcattggtgttgtctccttccttgcattagtagtaaa |
3243455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 28102669 - 28102782
Alignment:
| Q |
19 |
cagagaccttgcccaacatgtcagcttcaacctgtttcttgccattcaaatcatttctggttttcaatttgacaggtccttcagtgttgtttgatccatt |
118 |
Q |
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|||||| |||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28102669 |
cagagagcttgcccaacgtgtcagcatcaacctgtttcttgccactcaaatcatttctggttttcaatttgacaggtccgtcagtgttgtttgatccatt |
28102768 |
T |
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| Q |
119 |
caatttcctacaat |
132 |
Q |
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| T |
28102769 |
cagtttcctacaat |
28102782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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