View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8523_low_12 (Length: 258)
Name: NF8523_low_12
Description: NF8523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8523_low_12 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 38172590 - 38172352
Alignment:
| Q |
1 |
tgttgaaggggtggagaagcatgaccctcttaatgagggttccattctttggattactgaaaggcaaacacctcttggcttaattgatgaggtctttggt |
100 |
Q |
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| T |
38172590 |
tgttgaaggggtggagaagcatgaccctcttaatgagggttccattctttggattactgaaaggcaaacacctcttggcttaattgatgaggtctttggt |
38172491 |
T |
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| Q |
101 |
caagtaaaaaatccttattatgttgtgcgatacaattctgaaaaagaagttccagaagggatccgtgagggaactttgatttcttttgttgcagaatttg |
200 |
Q |
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| T |
38172490 |
caagtaaaaaatccttattatgttgtgcgatacaattctgaaaaagaagttccagaagggatccgtgagggaactttgatttcttttgttgcagaatttg |
38172391 |
T |
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| Q |
201 |
taaatcatgtgctaaataacaaggacctttacaagaaag |
239 |
Q |
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| T |
38172390 |
taaatcatgtgctaaataacaaggacctttacaagaaag |
38172352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 113 - 239
Target Start/End: Complemental strand, 48241100 - 48240974
Alignment:
| Q |
113 |
ccttattatgttgtgcgatacaattctgaaaaagaagttccagaagggatccgtgagggaactttgatttcttttgttgcagaatttgtaaatcatgtgc |
212 |
Q |
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| T |
48241100 |
ccttattatgctgtgagatacaactctgaaaaagaagtgccagaagggatccgtgagggaactttgatttcctttgttgcggaatttgtaaatcatgtgc |
48241001 |
T |
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| Q |
213 |
taaataacaaggacctttacaagaaag |
239 |
Q |
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| T |
48241000 |
ttaataacaaggacctttacaagaaag |
48240974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 26 - 211
Target Start/End: Complemental strand, 48245012 - 48244839
Alignment:
| Q |
26 |
cctcttaatgagggttccattctttggattactgaaaggcaaacacctcttggcttaattgatgaggtctttggtcaagtaaaaaatccttattatgttg |
125 |
Q |
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| T |
48245012 |
cctcttattgagggttccattctctggattactgaaaggcaaacatcgcttggtttaattgatgagatctttggacaagttaaaaatccttattatgctg |
48244913 |
T |
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| Q |
126 |
tgcgatacaattctgaaaaagaagttccagaagggatccgtgagggaactttgatttcttttgttgcagaatttgtaaatcatgtg |
211 |
Q |
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| T |
48244912 |
tgagatacaactctgaaa------------aagggatccgtgagggaactttgatttcctttgttgcagaatttgtaaattatgtg |
48244839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 31196 - 31057
Alignment:
| Q |
5 |
gaaggggtggagaagcatgaccctcttaatgagggttccattctttggattactgaaaggcaaacacctcttggcttaattgatgaggtctttggtcaag |
104 |
Q |
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||||| |||||||||||||| ||||||||||||||||| |||| ||| | |||||||| | | ||| || || ||| ||||||| ||||||| | || |
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| T |
31196 |
gaaggagtggagaagcatgaacctcttaatgagggttctgttctgtggctgactgaaagccgcaaaccactaggtttagttgatgaaatctttggaccag |
31097 |
T |
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| Q |
105 |
taaaaaatccttattatgttgtgcgatacaattctgaaaa |
144 |
Q |
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| T |
31096 |
tcaaaaacccgtattatgttgtgagatataattctgaaaa |
31057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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