View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8523_low_15 (Length: 251)
Name: NF8523_low_15
Description: NF8523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8523_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 47319269 - 47319132
Alignment:
| Q |
1 |
ttgcttcataagttctcctaaatagtctcacaagtgattatactggtagattagattagataagacattccaaacaagaccttagtctgtcaatgtctct |
100 |
Q |
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| T |
47319269 |
ttgcttcataagttctcctaaatagtctcacaagtgattatactggtagattagattagataagacattccaaacaagaccttagtctgtcaatgtctct |
47319170 |
T |
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| Q |
101 |
atttttggttaaggaatgttctctctattttcctcggc |
138 |
Q |
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| T |
47319169 |
atttttggttaaggaatgctctctctattttcctcggc |
47319132 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 10939455 - 10939501
Alignment:
| Q |
5 |
ttcataagttctcctaaatagtctcacaagtgattatactggtagat |
51 |
Q |
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| T |
10939455 |
ttcataagttctcctaaacagtctcagaagtgcttatacaggtagat |
10939501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 36070261 - 36070297
Alignment:
| Q |
5 |
ttcataagttctcctaaatagtctcacaagtgattat |
41 |
Q |
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| T |
36070261 |
ttcataagttctcctaaacagtctcacaagtgcttat |
36070297 |
T |
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