View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8523_low_19 (Length: 240)

Name: NF8523_low_19
Description: NF8523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8523_low_19
NF8523_low_19
[»] chr4 (10 HSPs)
chr4 (1-223)||(55636330-55636552)
chr4 (13-108)||(52984723-52984818)
chr4 (62-223)||(54861354-54861515)
chr4 (22-133)||(54628177-54628288)
chr4 (53-223)||(51316038-51316208)
chr4 (3-223)||(55664453-55664678)
chr4 (175-221)||(3671556-3671602)
chr4 (3-97)||(55619873-55619971)
chr4 (3-97)||(55627177-55627275)
chr4 (3-97)||(55658223-55658321)
[»] chr8 (1 HSPs)
chr8 (78-221)||(9890657-9890800)
[»] chr2 (1 HSPs)
chr2 (24-220)||(13402711-13402907)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 55636552 - 55636330
Alignment:
Q  1 catgaagaacaacataagcaataaagaaattaacattgcattttattaaatgtgatattcaacatcatttgagtttaaaaaagatgggatttattagatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55636552 catgaagaacaacataagcaataaagaaattaacattgcattttattaaatgtgatattcaacatcatttgagtttaaaaaagatgggatttattagatt 55636453  T
Q  101 gcctgtatttgctctctgtgtccagctgtaatgcatgatatagtacgacaagcttatttcttgatgatattcgtgtgattatttgtcaacaggctcaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  55636452 gcctgtatttgctctctgtgtccagctgtaatgcatgatatagtacgacaagcttctttcttgatgatattcgtgtgattatttgtcaacaggctcaaaa 55636353  T
Q  201 tgcacgggagtgaaccatgattg 223  Q
    |||||||||||||||||||||||    
T  55636352 tgcacgggagtgaaccatgattg 55636330  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 52984723 - 52984818
Alignment:
Q  13 cataagcaataaagaaattaacattgcattttattaaatgtgatattcaacatcatttgagtttaaaaaagatgggatttattagattgcctgtat 108  Q
    |||||||||||||||||||||||||||| |||||||||  ||||||| |||||||||||||| | ||||||||||||||| |||| || |||||||    
T  52984723 cataagcaataaagaaattaacattgcactttattaaacatgatatttaacatcatttgagtatcaaaaagatgggatttgttagcttacctgtat 52984818  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 223
Target Start/End: Original strand, 54861354 - 54861515
Alignment:
Q  62 acatcatttgagtttaaaaaagatgggatttattagattgcctgtatttgctctctgtgtccagctgtaatgcatgatatagtacgacaagcttatttct 161  Q
    ||||||||||||| | ||||  |||||||||||||| || ||||||| |||||||||| |||||||||||||  ||| | ||| |  ||| ||| |||||    
T  54861354 acatcatttgagtatcaaaataatgggatttattagcttacctgtatctgctctctgtttccagctgtaatgtttgacacagtccagcaaacttctttct 54861453  T
Q  162 tgatgatattcgtgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattg 223  Q
    | ||  | ||| ||||| || | |||||||||||||||| ||| ||||||||||||||||||    
T  54861454 taatacttttcttgtgactactggtcaacaggctcaaaaggcatgggagtgaaccatgattg 54861515  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 54628288 - 54628177
Alignment:
Q  22 taaagaaattaacattgcattttattaaatgtgatattcaacatcatttgagtttaaaaaagatgggatttattagattgcctgtatttgctctctgtgt 121  Q
    ||||||||||||||||| | ||||||||   ||| ||| | |||||||||||| | ||||||||||||||||| || || ||||||| |||||||||| |    
T  54628288 taaagaaattaacattgtactttattaagcatgaaatttagcatcatttgagtatcaaaaagatgggatttataagcttacctgtatctgctctctgttt 54628189  T
Q  122 ccagctgtaatg 133  Q
    ||||||||||||    
T  54628188 ccagctgtaatg 54628177  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 223
Target Start/End: Complemental strand, 51316208 - 51316038
Alignment:
Q  53 tgatattcaacatcatttgagtttaaaaaagatgggatttattagattgcctgtatttgctctctgtgtccagctgtaatgcatgatatagtacgacaag 152  Q
    ||||||| ||| |||||||||| |||||||||||||| ||||| | || ||||||| ||||||||||  ||||||||||||  ||||| ||| |  ||||    
T  51316208 tgatatttaacgtcatttgagtataaaaaagatgggaattatttgtttacctgtatctgctctctgttaccagctgtaatgtttgatacagtcctgcaag 51316109  T
Q  153 cttatttcttgatgatattcgtgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattg 223  Q
    ||| || ||| ||  | ||  |||||| ||  |||||||||||||||| |||  |||||||||||||||||    
T  51316108 cttcttgcttaatacttttgttgtgatcatgggtcaacaggctcaaaaggcattggagtgaaccatgattg 51316038  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 55664453 - 55664678
Alignment:
Q  3 tgaagaacaacataagcaataaagaaattaacattgcattttattaaatgtgatattcaacatcatttgagt-----ttaaaaaagatgggatttattag 97  Q
    ||||||| | ||| ||||||||||||||  |||||||| || ||||||  ||||||| ||||||||||||||      ||||||||||| |||||| ||     
T  55664453 tgaagaaaagcatgagcaataaagaaatcgacattgcacttcattaaacatgatatttaacatcatttgagtatataataaaaaagatgagatttagtaa 55664552  T
Q  98 attgcctgtatttgctctctgtgtccagctgtaatgcatgatatagtacgacaagcttatttcttgatgatattcgtgtgattatttgtcaacaggctca 197  Q
      | | ||||| |||||||||| |||||||||||||   ||||||||    ||||||| |||||| ||  | ||   ||||  || ||||||||| ||||    
T  55664553 cctacttgtatctgctctctgtttccagctgtaatgttggatatagtcaagcaagcttctttcttaatacttttatcgtgaaaatgtgtcaacagactca 55664652  T
Q  198 aaatgcacgggagtgaaccatgattg 223  Q
    ||| ||| ||||||||||||||||||    
T  55664653 aaaggcatgggagtgaaccatgattg 55664678  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 3671556 - 3671602
Alignment:
Q  175 gtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgat 221  Q
    ||||||||  |||||||||||||||| ||| ||||||||||||||||    
T  3671556 gtgattatgggtcaacaggctcaaaaggcatgggagtgaaccatgat 3671602  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 55619873 - 55619971
Alignment:
Q  3 tgaagaacaacataagcaataaagaaattaacattgcattttattaaatgtgat----attcaacatcatttgagtttaaaaaagatgggatttattag 97  Q
    ||||||| | ||||||||||| ||||| ||||||||||  |||||| |  ||||    ||  ||||| |||||||| ||||||||||||||||||||||    
T  55619873 tgaagaaaagcataagcaatacagaaactaacattgcacattattatacatgatcgatatgtaacattatttgagtataaaaaagatgggatttattag 55619971  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 55627177 - 55627275
Alignment:
Q  3 tgaagaacaacataagcaataaagaaattaacattgcattttattaaatgtgat----attcaacatcatttgagtttaaaaaagatgggatttattag 97  Q
    ||||||| | ||||||||||| ||||| ||||||||||  |||||| |  ||||    ||  ||||| |||||||| ||||||||||||||||||||||    
T  55627177 tgaagaaaagcataagcaatacagaaactaacattgcacattattatacatgatcgatatgtaacattatttgagtataaaaaagatgggatttattag 55627275  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 55658223 - 55658321
Alignment:
Q  3 tgaagaacaacataagcaataaagaaattaacattgcattttattaaatgtgat----attcaacatcatttgagtttaaaaaagatgggatttattag 97  Q
    ||||||| | ||||||||||| ||||| ||||||||||  |||||| |  ||||    ||  ||||| |||||||| ||||||||||||||||||||||    
T  55658223 tgaagaaaagcataagcaatacagaaactaacattgcacattattatacatgatcgatatgtaacattatttgagtataaaaaagatgggatttattag 55658321  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 9890800 - 9890657
Alignment:
Q  78 aaaaagatgggatttattagattgcctgtatttgctctctgtgtccagctgtaatgcatgatatagtacgacaagcttatttcttgatgatattcgtgtg 177  Q
    ||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||  ||||||||| |  ||||||| |||| | ||  | | |  |||    
T  9890800 aaaaagatgggatttattagattacctgtatctgctctctgtttccagctgtaatgtttgatatagtccagcaagcttctttcctaatagtttcctcgtg 9890701  T
Q  178 attatttgtcaacaggctcaaaatgcacgggagtgaaccatgat 221  Q
    |||||  |||||||||||||||| ||| ||||||||||||||||    
T  9890700 attatgggtcaacaggctcaaaaggcatgggagtgaaccatgat 9890657  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 220
Target Start/End: Complemental strand, 13402907 - 13402711
Alignment:
Q  24 aagaaattaacattgcattttattaaatgtgatattcaacatcatttgagtt-taaaaaagatgggatttattagattgcctgtatttgctctctgtgtc 122  Q
    |||| ||||||||||||||| |||| |  ||||||| ||||||| ||||||| | | ||| |||||||||   || || ||||||| |||||| ||| ||    
T  13402907 aagatattaacattgcatttaattagacatgatatttaacatcaattgagttattataaacatgggatttgc-aggttacctgtatctgctctttgtttc 13402809  T
Q  123 cagctgtaatgcatgatatagtacgacaagcttatttcttgatgatattcgtgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatga 220  Q
    |||||||||||  ||||||||| |  ||||||| |||||| ||  | ||| |||||||||  ||||||||||||||||  || |||||||||||||||    
T  13402808 cagctgtaatgtttgatatagtccagcaagcttctttcttaatacttttcttgtgattatgggtcaacaggctcaaaagacatgggagtgaaccatga 13402711  T

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