View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8523_low_2 (Length: 511)
Name: NF8523_low_2
Description: NF8523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8523_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 11624334 - 11623831
Alignment:
| Q |
1 |
tcgccgcaaactttgtgtcctccgggatttcccatgtcattttaccctgctcctttttggaatgttccttggtttccgcctcatactcccgcgacaactc |
100 |
Q |
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| T |
11624334 |
tcgccgcaaactttgtgtcctccgggatttcccatgtcattttaccctgctcctttttggaatgttccttggtttccgcctcatactcccgcgacaactc |
11624235 |
T |
|
| Q |
101 |
caagatctagtccgaaatctccaacgctcgggaaacactcgagggacgatgacaacaacgacgacgaaatagctaaacaagaccatttgcaaacagaaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||||||| |
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| T |
11624234 |
caagatctagtccgaaatctccaacgctcgggaaacactcgagggacgatgacaacaccaacgacgaaaatgctaaacaagacagtttgcaaacagaaga |
11624135 |
T |
|
| Q |
201 |
atcaccaaaacaaagaaatgggtgtgttttggttcctaaaacattgcgaattgatgatccaaccgaagctgcaaagagttcaatttgggaaacacttgga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11624134 |
atcaccaaaacaaagaaatgggtgtgttttggttcctaaaacattgcgaattgatgatccaaccgaagctgcaaagagttcaatttgggaaacacttgga |
11624035 |
T |
|
| Q |
301 |
attaagaatgaaggtttgagtagaggtggtatgactaaggcttttcaatcaaagaaagatggtaaaaaccatgttcaaacctctccgatgttgatggcta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11624034 |
attaagaatgaaggtttgagtagaggtggtatgactaaggcttttcaatcaaagaaagatggtaaaaaccatgttcaaacctctccaatgttgatggcta |
11623935 |
T |
|
| Q |
401 |
accctgcagctttagctagatcacttaatttccatgagaactcttaaataagaaataatcctttttgtattgtgtttgagaattgaggttagtcacttct |
500 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11623934 |
accctgcagctttagctagatcgcttaatttccatgagaactcttaaataagaaataatcctttttgtattgtgtttgagaattgaggttagtcacttct |
11623835 |
T |
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| Q |
501 |
tctc |
504 |
Q |
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|||| |
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| T |
11623834 |
tctc |
11623831 |
T |
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