View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8523_low_20 (Length: 223)

Name: NF8523_low_20
Description: NF8523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8523_low_20
NF8523_low_20
[»] chr8 (10 HSPs)
chr8 (41-212)||(191489-191660)
chr8 (41-212)||(719093-719264)
chr8 (41-212)||(880200-880371)
chr8 (1-45)||(192172-192216)
chr8 (1-45)||(719776-719820)
chr8 (1-45)||(880883-880927)
chr8 (1-41)||(192244-192284)
chr8 (1-41)||(719848-719888)
chr8 (1-41)||(880955-880995)
chr8 (67-117)||(19646064-19646114)
[»] chr3 (3 HSPs)
chr3 (41-212)||(51127193-51127364)
chr3 (1-45)||(51126637-51126681)
chr3 (1-41)||(51126569-51126609)
[»] chr2 (3 HSPs)
chr2 (45-212)||(13894272-13894439)
chr2 (45-212)||(14034899-14035066)
chr2 (67-117)||(23376514-23376564)
[»] chr5 (1 HSPs)
chr5 (45-212)||(33230729-33230896)
[»] chr6 (1 HSPs)
chr6 (87-178)||(17832788-17832879)
[»] chr1 (1 HSPs)
chr1 (67-117)||(4343977-4344027)
[»] chr7 (1 HSPs)
chr7 (87-178)||(37636302-37636393)
[»] chr4 (1 HSPs)
chr4 (67-117)||(22696630-22696680)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 191660 - 191489
Alignment:
Q  41 tcatgaacaagtctatatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatttctcgcctt 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  191660 tcatgaacaagtctatatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatttctcgcctt 191561  T
Q  141 acatgtctcagcaatctctttcacagcttcagctattgccaatgcgggagttgtctttttcttggttttctt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  191560 acatgtctcagcaatctctttcacagcttcagctattgccaatgcgggagttgtctttttcttggttttctt 191489  T

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Target: chr8; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 719264 - 719093
Alignment:
Q  41 tcatgaacaagtctatatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatttctcgcctt 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  719264 tcatgaacaagtctatatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatttctcgcctt 719165  T
Q  141 acatgtctcagcaatctctttcacagcttcagctattgccaatgcgggagttgtctttttcttggttttctt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  719164 acatgtctcagcaatctctttcacagcttcagctattgccaatgcgggagttgtctttttcttggttttctt 719093  T

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Target: chr8; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 880371 - 880200
Alignment:
Q  41 tcatgaacaagtctatatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatttctcgcctt 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  880371 tcatgaacaagtctatatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatttctcgcctt 880272  T
Q  141 acatgtctcagcaatctctttcacagcttcagctattgccaatgcgggagttgtctttttcttggttttctt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  880271 acatgtctcagcaatctctttcacagcttcagctattgccaatgcgggagttgtctttttcttggttttctt 880200  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 192216 - 192172
Alignment:
Q  1 tacagaaaactatagcagaattatgtacagtatagcagaatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  192216 tacagaaaactatagcagaattatgtacagtatagcagaatcatg 192172  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 719820 - 719776
Alignment:
Q  1 tacagaaaactatagcagaattatgtacagtatagcagaatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  719820 tacagaaaactatagcagaattatgtacagtatagcagaatcatg 719776  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 880927 - 880883
Alignment:
Q  1 tacagaaaactatagcagaattatgtacagtatagcagaatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  880927 tacagaaaactatagcagaattatgtacagtatagcagaatcatg 880883  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 192284 - 192244
Alignment:
Q  1 tacagaaaactatagcagaattatgtacagtatagcagaat 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  192284 tacagaaaactatagcagaattatgtacagtatagcagaat 192244  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 719888 - 719848
Alignment:
Q  1 tacagaaaactatagcagaattatgtacagtatagcagaat 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  719888 tacagaaaactatagcagaattatgtacagtatagcagaat 719848  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 880995 - 880955
Alignment:
Q  1 tacagaaaactatagcagaattatgtacagtatagcagaat 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  880995 tacagaaaactatagcagaattatgtacagtatagcagaat 880955  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 19646114 - 19646064
Alignment:
Q  67 atttcatccatgctatggagctcagccatcactacaccaatagatgcatta 117  Q
    |||||||||||| | || |||| |||||||||| |||||||||||||||||    
T  19646114 atttcatccatggtgtgaagcttagccatcacttcaccaatagatgcatta 19646064  T

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Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 51127193 - 51127364
Alignment:
Q  41 tcatgaacaagtctatatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatttctcgcctt 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51127193 tcatgaacaagtctatatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatttctcgcctt 51127292  T
Q  141 acatgtctcagcaatctctttcacagcttcagctattgccaatgcgggagttgtctttttcttggttttctt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51127293 acatgtctcagcaatctctttcacagcttcagctattgccaatgcgggagttgtctttttcttggttttctt 51127364  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 51126637 - 51126681
Alignment:
Q  1 tacagaaaactatagcagaattatgtacagtatagcagaatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  51126637 tacagaaaactatagcagaattatgtacagtatagcagaatcatg 51126681  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 51126569 - 51126609
Alignment:
Q  1 tacagaaaactatagcagaattatgtacagtatagcagaat 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  51126569 tacagaaaactatagcagaattatgtacagtatagcagaat 51126609  T

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Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 45 - 212
Target Start/End: Complemental strand, 13894439 - 13894272
Alignment:
Q  45 gaacaagtctatatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatttctcgccttacat 144  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||| ||| |||||||||||||| |||||||    
T  13894439 gaacaagtctacatcacttgtaatttcatccatgctatggagctcagccatcacatcaccaatagatgcattagttaaaacatcatttctcgtcttacat 13894340  T
Q  145 gtctcagcaatctctttcacagcttcagctattgccaatgcgggagttgtctttttcttggttttctt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13894339 gtctcagcaatctctttcacagcttcagctattgccaatgcgggagttgtctttttcttggttttctt 13894272  T

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Target: chr2; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 45 - 212
Target Start/End: Complemental strand, 14035066 - 14034899
Alignment:
Q  45 gaacaagtctatatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatttctcgccttacat 144  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||| ||| |||||||||||||| |||||||    
T  14035066 gaacaagtctacatcacttgtaatttcatccatgctatggagctcagccatcacatcaccaatagatgcattagttaaaacatcatttctcgtcttacat 14034967  T
Q  145 gtctcagcaatctctttcacagcttcagctattgccaatgcgggagttgtctttttcttggttttctt 212  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14034966 gtctcagcaatctctttcatagcttcagctattgccaatgcgggagttgtctttttcttggttttctt 14034899  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 23376514 - 23376564
Alignment:
Q  67 atttcatccatgctatggagctcagccatcactacaccaatagatgcatta 117  Q
    |||||||||||| | || |||||| |||||||| |||||||||||||||||    
T  23376514 atttcatccatggtgtgaagctcaaccatcacttcaccaatagatgcatta 23376564  T

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Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 45 - 212
Target Start/End: Complemental strand, 33230896 - 33230729
Alignment:
Q  45 gaacaagtctatatcacttgttatttcatccatgctatggagctcagccatcactacaccaatagatgcattatttataacatcatttctcgccttacat 144  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||| ||| |||||||||||||| |||||||    
T  33230896 gaacaagtctacatcacttgtaatttcatccatgctatggagctcagccatcacatcaccaatagatgcattagttaaaacatcatttctcgtcttacat 33230797  T
Q  145 gtctcagcaatctctttcacagcttcagctattgccaatgcgggagttgtctttttcttggttttctt 212  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33230796 gtctcagcaatctctttcatagcttcagctattgccaatgcgggagttgtctttttcttggttttctt 33230729  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 178
Target Start/End: Original strand, 17832788 - 17832879
Alignment:
Q  87 ctcagccatcactacaccaatagatgcattatttataacatcatttctcgccttacatgtctcagcaatctctttcacagcttcagctattg 178  Q
    ||||||||||||| ||||||||||||||||| ||||| | ||||| | || ||| || ||||| |||||| | || ||||| ||||||||||    
T  17832788 ctcagccatcacttcaccaatagatgcattacttatagcctcattccgcgacttgcaagtctccgcaatcacattaacagcctcagctattg 17832879  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 4344027 - 4343977
Alignment:
Q  67 atttcatccatgctatggagctcagccatcactacaccaatagatgcatta 117  Q
    |||||||||||| | || ||||||||||||||| |||||||||||||||||    
T  4344027 atttcatccatggtgtgaagctcagccatcacttcaccaatagatgcatta 4343977  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 37636393 - 37636302
Alignment:
Q  87 ctcagccatcactacaccaatagatgcattatttataacatcatttctcgccttacatgtctcagcaatctctttcacagcttcagctattg 178  Q
    ||||||||||||  ||||||||||||||||| ||||| | ||||| | || ||| || ||||| ||||| || || ||||| ||||||||||    
T  37636393 ctcagccatcacctcaccaatagatgcattacttatagcctcattccgcgacttgcaagtctccgcaatatcattaacagcctcagctattg 37636302  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 22696680 - 22696630
Alignment:
Q  67 atttcatccatgctatggagctcagccatcactacaccaatagatgcatta 117  Q
    |||||||||||| | || ||||||||||||||| | |||||||||||||||    
T  22696680 atttcatccatggtgtgaagctcagccatcacttcgccaatagatgcatta 22696630  T

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