View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8523_low_21 (Length: 221)
Name: NF8523_low_21
Description: NF8523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8523_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 9352204 - 9352319
Alignment:
| Q |
2 |
gaaaagactcatcctagagttgcttatttatgtaagtgtttcttcaacttctattctcttccgttttcattgttacaatgacagattatagagtaactca |
101 |
Q |
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| T |
9352204 |
gaaaagactcatcctagagttgcttatttatgtaagtgtttcttcaacttctattctcttccattttcattgttacaatgacagattatagagtaactca |
9352303 |
T |
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| Q |
102 |
ccaggtcaacattgaa |
117 |
Q |
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| T |
9352304 |
ccaggtcaacattgaa |
9352319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 9352319 - 9352367
Alignment:
| Q |
153 |
attgatgaattactcataggtcatgttatgctatgttttgtttggtgat |
201 |
Q |
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| T |
9352319 |
attgatgaattactcataggtcatgttatgctatgttttgtttggtgat |
9352367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 650207 - 650245
Alignment:
| Q |
2 |
gaaaagactcatcctagagttgcttatttatgtaagtgt |
40 |
Q |
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| T |
650207 |
gaaaagactcatcctaaagttgcttatttatgtaagtgt |
650245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 426702 - 426665
Alignment:
| Q |
2 |
gaaaagactcatcctagagttgcttatttatgtaagtg |
39 |
Q |
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| T |
426702 |
gaaaaaactcatcctagagttgcttatttatgtaagtg |
426665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 52596117 - 52596158
Alignment:
| Q |
2 |
gaaaagactcatcctagagttgcttatttatgtaagtgtttc |
43 |
Q |
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||||||||||||||||||||||||||| | ||||||| |||| |
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| T |
52596117 |
gaaaagactcatcctagagttgcttatctctgtaagtatttc |
52596158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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