View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8523_low_3 (Length: 466)
Name: NF8523_low_3
Description: NF8523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8523_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 33051978 - 33051601
Alignment:
| Q |
1 |
tacttgtgtttgtgctcttggaatcaagaattggaacaacatttattctttgtgcgaagtttggaataatatttggtataaagtgtgcaaataacttgga |
100 |
Q |
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| T |
33051978 |
tacttgtgtttgtgctcttggaatcaagaattggaacaacatttattctttgtgcgaagtttggattaatattttgtataaagtgtgcaaataacttgga |
33051879 |
T |
|
| Q |
101 |
gtttttatggttacccccaagagatttagaaactttgtttctggt-aattaactagactagccaggacgaaacaaaaaggggtgaagggtctagacttaa |
199 |
Q |
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| T |
33051878 |
gtttttatggttacccccaagagatttagaaactttgtttctggtaaattaactagactagccaggacgaaacaaaaaggggtgaaggttctagacttaa |
33051779 |
T |
|
| Q |
200 |
tttgacaatcaatgatttaggaaatttgagccacnnnnnnnttaaagagttctttcagactcggtcatgaaggttcctagcatgattgaacttattaaaa |
299 |
Q |
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| T |
33051778 |
tttgacaatcaatgatttaggaaatttgagccacaaaaaaattgaagagttctttcagactcggtcatgaaggttcctagcatgattgaacttattaaaa |
33051679 |
T |
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| Q |
300 |
cagtcttaaaatgatttctgacaaagacaatgggacactgtcttttctataactggtgtgttaatctggactcgaggg |
377 |
Q |
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| T |
33051678 |
cagtcttaaaatgatttctgacaaagacaatgggacactgtcttttctataagtggtgtgttaatctggactcgaggg |
33051601 |
T |
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