View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8523_low_8 (Length: 327)
Name: NF8523_low_8
Description: NF8523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8523_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 309
Target Start/End: Complemental strand, 55636821 - 55636521
Alignment:
| Q |
9 |
atgaaaacaaaaatcaagacccaacctagaacagaaaacataatttcaatagtcaagcatcacaatacattcccttaggtgatgtattaacaacaaaatg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55636821 |
atgaaaacaaaaatcaagacccaacctagaacagaaaacataatgtcaatagtcaagcatcacaatacattcccttaggtgatgtattaacaacaaaatg |
55636722 |
T |
|
| Q |
109 |
gaaaataagggtttacggtcaccgaacaacccaactaatactctgattggtgtaacctgtgaactgaatatatcaccaacaagactacaatggttattat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
55636721 |
gaaaataagggtttacggtcaccgaacaacccaactaatactctgattggtgtaacctgtgaactgaatatatcatcaacaagactacaatggttattat |
55636622 |
T |
|
| Q |
209 |
tgcaccacatctccatgttaaacaacatgtaagcttcaatttatatgcatgtaatacgcaaacatcaaacatgaagaacaacataagcaatgaagaaatt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
55636621 |
tgcaccacatctccatgttaaacaacatgtaagcttcaatttatatgcatgtaatgcccaaacatcaaacatgaagaacaacataagcaataaagaaatt |
55636522 |
T |
|
| Q |
309 |
a |
309 |
Q |
| |
|
| |
|
|
| T |
55636521 |
a |
55636521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 24 - 258
Target Start/End: Original strand, 55619639 - 55619866
Alignment:
| Q |
24 |
aagacccaacctagaacagaaaacataatttcaatagtcaagcatcacaatacattcccttaggtgatgtattaacaacaaaatggaaaataagggttta |
123 |
Q |
| |
|
||||||||||||| ||||||||| ||||| |||||||||||||| |||||||||| ||||| ||||||||| || |||||||||||||||| ||| || |
|
|
| T |
55619639 |
aagacccaacctaaaacagaaaatataatatcaatagtcaagcaccacaatacatccccttcaatgatgtatttactacaaaatggaaaataaaggtata |
55619738 |
T |
|
| Q |
124 |
cggtcaccgaacaacccaactaatactctgattggtgt--aacctgtgaactgaatatatcaccaacaagactacaatggttattattgcaccacatctc |
221 |
Q |
| |
|
| ||||| | ||||||| ||||||||||||||| |||||| |||| ||||||||| ||||||||||| || |||| |||||||||||||||| |
|
|
| T |
55619739 |
ca-tcacc-----atccaactattactctgattggtgtgtaacctgataactaaatatatcatcaacaagactataa--gttaatattgcaccacatctc |
55619830 |
T |
|
| Q |
222 |
catgttaaacaacatgtaagcttcaatttatatgcat |
258 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
55619831 |
catgttaaacaacatgt-agcttcaatttatatgcat |
55619866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 24 - 258
Target Start/End: Original strand, 55657989 - 55658216
Alignment:
| Q |
24 |
aagacccaacctagaacagaaaacataatttcaatagtcaagcatcacaatacattcccttaggtgatgtattaacaacaaaatggaaaataagggttta |
123 |
Q |
| |
|
||||||||||||| ||||||||| ||||| |||||||||||||| |||||||||| ||||| ||||||||| || |||||||||||||||| ||| || |
|
|
| T |
55657989 |
aagacccaacctaaaacagaaaatataatatcaatagtcaagcaccacaatacatccccttcaatgatgtatttactacaaaatggaaaataaaggtata |
55658088 |
T |
|
| Q |
124 |
cggtcaccgaacaacccaactaatactctgattggtgt--aacctgtgaactgaatatatcaccaacaagactacaatggttattattgcaccacatctc |
221 |
Q |
| |
|
| ||||| | ||||||| ||||||||||||||| |||||| |||| ||||||||| ||||||||||| || |||| |||||||||||||||| |
|
|
| T |
55658089 |
ca-tcacc-----atccaactattactctgattggtgtgtaacctgataactaaatatatcatcaacaagactataa--gttaatattgcaccacatctc |
55658180 |
T |
|
| Q |
222 |
catgttaaacaacatgtaagcttcaatttatatgcat |
258 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
55658181 |
catgttaaacaacatgt-agcttcaatttatatgcat |
55658216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 258
Target Start/End: Original strand, 55626943 - 55627170
Alignment:
| Q |
24 |
aagacccaacctagaacagaaaacataatttcaatagtcaagcatcacaatacattcccttaggtgatgtattaacaacaaaatggaaaataagggttta |
123 |
Q |
| |
|
||||||||||||| ||||||||| ||||| |||||||||||||| |||||||||| ||||| ||||||||| || |||||||||||||||| ||| || |
|
|
| T |
55626943 |
aagacccaacctaaaacagaaaatataatatcaatagtcaagcaccacaatacatccccttcaatgatgtatttactacaaaatggaaaataaaggtata |
55627042 |
T |
|
| Q |
124 |
cggtcaccgaacaacccaactaatactctgattggtgt--aacctgtgaactgaatatatcaccaacaagactacaatggttattattgcaccacatctc |
221 |
Q |
| |
|
| ||||| | ||||||| ||||||||||||||| |||||| |||| ||||||||| ||||||||||| || |||| |||||||||||||||| |
|
|
| T |
55627043 |
ca-tcacc-----atccaactattactctgattggtgtgtaacctgataactaaatatatcatcaacaagactataa--gttaatattgcaccacatctc |
55627134 |
T |
|
| Q |
222 |
catgttaaacaacatgtaagcttcaatttatatgcat |
258 |
Q |
| |
|
||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
55627135 |
catgttaaaaaacatgt-agcttcaaattatatgcat |
55627170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 111 - 307
Target Start/End: Original strand, 55664287 - 55664480
Alignment:
| Q |
111 |
aaataagggtttacggtcaccgaacaacccaactaatactctgattggtgtaacctgtgaactgaatatatcaccaacaagactacaatggttattattg |
210 |
Q |
| |
|
|||||||||||| |||||| |||| ||||||| |||| |||||||||||||| | ||||| |||||||||||||||| |||||||||| | ||| |
|
|
| T |
55664287 |
aaataagggtttctagtcacctaacagtccaactattactttgattggtgtaaccagagaactaaatatatcaccaacaaagctacaatggtaactat-- |
55664384 |
T |
|
| Q |
211 |
caccacatctccatgttaaacaacatgtaagcttcaatttatatgcatgtaatacgcaaacatcaaacatgaagaacaacataagcaatgaagaaat |
307 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||| ||| |||||||||| |||| |||||||||||| ||||||| | ||| |||||| ||||||| |
|
|
| T |
55664385 |
caccacatctccatgttaaacaacgtgt-acctttgattaatatgcatgtgatacccaaacatcaaacttgaagaaaagcatgagcaataaagaaat |
55664480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 157 - 265
Target Start/End: Original strand, 52983850 - 52983957
Alignment:
| Q |
157 |
ggtgtaacctgtgaactgaatatatcaccaacaagactacaatggttattattgcaccacatctccatgttaaacaacatgtaagcttcaatttatatgc |
256 |
Q |
| |
|
||||||||||| ||||| |||||| || ||| |||||| ||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
52983850 |
ggtgtaacctgagaactaaatataccatcaagaagactgcaatggttactatagcaccacatctccattttaaacaacatgt-agcttcaatttatatgc |
52983948 |
T |
|
| Q |
257 |
atgtaatac |
265 |
Q |
| |
|
|||| |||| |
|
|
| T |
52983949 |
atgtgatac |
52983957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 54629786 - 54629672
Alignment:
| Q |
38 |
aacagaaaacataatttcaatagtcaagcatcacaatacattcccttaggtgatgtattaacaacaaaatggaaaataagggtttacggtcaccgaacaa |
137 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||||||||||| ||| |||||||||| ||||||||||||||||||||||||||| ||||| || | |
|
|
| T |
54629786 |
aacagaaaacataatgccaatagtcaagcgtaacaatacattctcttcagtgatgtatttacaacaaaatggaaaataagggtttacaatcacctaaaat |
54629687 |
T |
|
| Q |
138 |
cccaactaatactct |
152 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
54629686 |
tccaactaatactct |
54629672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 275
Target Start/End: Complemental strand, 54628409 - 54628314
Alignment:
| Q |
176 |
atatatcaccaacaagactacaatggttattattgcaccacatctccatgttaaacaacatgtaagcttcaatttatatgcatgtaatacgcaaacatca |
275 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||||||||||||||| | ||| |||||||| ||||||||||| |||| |||| ||||||||| |
|
|
| T |
54628409 |
atatatcatcagcaagagtacaatggttattattgcaccacatctccatctcaaataacatgta----gcaatttatatgtatgtgatacccaaacatca |
54628314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 52983502 - 52983610
Alignment:
| Q |
13 |
aaacaaaaatcaagacccaacctagaacagaaaacataatttcaatagtcaagcatcacaatacattcccttaggtgatgtattaacaacaaaatggaaa |
112 |
Q |
| |
|
|||||||| ||||||| |||| | ||||||||||||||| ||||||||||||||| ||||||| ||||| |||||| || | ||||||||||||| |
|
|
| T |
52983502 |
aaacaaaactcaagacataaccaa-aacagaaaacataatgtcaatagtcaagcattgcaatacacccccttcattgatgtctttaaaacaaaatggaaa |
52983600 |
T |
|
| Q |
113 |
ataagggttt |
122 |
Q |
| |
|
|||||||||| |
|
|
| T |
52983601 |
ataagggttt |
52983610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 55664229 - 55664284
Alignment:
| Q |
22 |
tcaagacccaacctagaacagaaaacataatttcaatagtcaagcatcacaatacat |
78 |
Q |
| |
|
||||||||||||| | |||||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
55664229 |
tcaagacccaacccaaaacagaaaccata-tgtcaatagtcaagcatcacaatacat |
55664284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 9891101 - 9890819
Alignment:
| Q |
13 |
aaacaaaaatcaagacccaacctagaacagaaaacataatttcaatagtcaagcatcacaatacattcccttaggtgatgtattaacaacaaaatggaaa |
112 |
Q |
| |
|
|||||||| |||||||||| || | |||||||||||||| | ||||||||| ||||| || ||| ||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
9891101 |
aaacaaaactcaagacccagcccaaaacagaaaacataaagtaaatagtcaatcatcataacacaaccccttcggtgatgtatttacagcaaaatggaaa |
9891002 |
T |
|
| Q |
113 |
ataagggtttacggtcaccgaacaacccaactaatactctgattggtgtaacctgtgaactgaatatatcaccaacaagactacaatggttattattgca |
212 |
Q |
| |
|
|||| ||||| ||||| ||||||| |||| |||||||||||||| | ||||| ||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
9891001 |
ctaag---------tcacctaacaatccaactattactttgattggtgtaaccagagaactaaatatatcatcaacaagactacaatagttattattgca |
9890911 |
T |
|
| Q |
213 |
ccacatctccatgttaaacaacatgtaagcttcaatttatatgcatgtaatacgcaaacatcaaacatgaagaacaacataagcaatgaagaaa |
306 |
Q |
| |
|
| |||||||||||||||||||||||| || |||||||||||||||||| ||| || |||||||| ||||||| | |||||||||| |||||| |
|
|
| T |
9890910 |
caacatctccatgttaaacaacatgt-agtttcaatttatatgcatgt-gtacccaggcatcaaacttgaagaaaagcataagcaataaagaaa |
9890819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 56 - 238
Target Start/End: Complemental strand, 13403128 - 13402949
Alignment:
| Q |
56 |
aatagtcaagcatcacaatacattcccttaggtgatgtattaacaacaaaatggaaaataagggtttacggtcaccgaacaacccaactaatactctgat |
155 |
Q |
| |
|
|||||||||| | ||||| |||||||| | | |||| || |||||| |||||||||||||| ||| |||||| ||||| ||||| | |||||| || |
|
|
| T |
13403128 |
aatagtcaagtaatacaattaattcccttcgataatgtttttacaacagcatggaaaataagggctta--gtcacctaacaaaccaacaattactctaat |
13403031 |
T |
|
| Q |
156 |
tggtgta--acctgtgaactgaatatatcaccaacaagactacaatggttattattgcaccacatctccatgttaaacaacatgt |
238 |
Q |
| |
|
||||||| ||||| ||||| |||||||| ||||||||||||||| | ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
13403030 |
tggtgtataacctgggaactaaatatatct---acaagactacaatggctgttattgcaccagatctccatgttaaacagcatgt |
13402949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University