View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8524_high_1 (Length: 818)
Name: NF8524_high_1
Description: NF8524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8524_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 672; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 10 - 799
Target Start/End: Complemental strand, 6185959 - 6185174
Alignment:
| Q |
10 |
ggagtagcagagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagca |
109 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185959 |
ggagcagccgagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagca |
6185860 |
T |
|
| Q |
110 |
ttattcaaggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaagat |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185859 |
ttattcaaggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaagat |
6185760 |
T |
|
| Q |
210 |
ggtggtaaaagagaatgatttaacattgttaggacttgtcggcattaaggatccatgtcgcccaggggtgaagacagcggtggaagcttgccaacatgct |
309 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185759 |
ggtggtaaaagagaatgatttaacattgttaggacttgtcggcattaaggatccatgtcgcccaggggtgaagacagcggtggaagcttgccaacatgcc |
6185660 |
T |
|
| Q |
310 |
ggtgtgaatgtcaaaatgatcacaggtattgctaaaatatctcatttatcagtaacttaatctttcgatcgatattgactacaaaatcctctatttatac |
409 |
Q |
| |
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|||||||||||||||||||| ||||||||| ||| |||||||||||||| |||||||| |||||| || |||| || || |||||| ||||||||||| |
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| T |
6185659 |
ggtgtgaatgtcaaaatgattacaggtattactataatatctcatttatgagtaacttgatcttt-ga---atatcgaatataaaatcgtctatttatac |
6185564 |
T |
|
| Q |
410 |
atacgagtctatacgaaaatgatggcaaactttatttctgattataataggtgacaatgttttcactgcaaaagctatagcatttgaatgtggaattctt |
509 |
Q |
| |
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|||| |||||| | |||||||||| | |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6185563 |
atacaagtctacatgaaaatgatgccgaactttatctctgattataataggtgacaatgttttcactgcgaaagctatagcatttgaatgtggaattctt |
6185464 |
T |
|
| Q |
510 |
caacctaatcaggacacagatgaaacggtggttgaaggcgaacagtttcgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtga |
609 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185463 |
caacctaatcaggacatagatgaaacggtggttgaaggcgaacaatttcgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtga |
6185364 |
T |
|
| Q |
610 |
tggcaagatcatctccatttgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcacc |
709 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185363 |
tggcaagatcatctccatttgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcacc |
6185264 |
T |
|
| Q |
710 |
ggcattgaaagaagccgatatcggtctttcaatgggaattcaaggtacagaagtagcaaaagagagttcagatattgttatattagatga |
799 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6185263 |
ggcattgaaagaagccgatatcggactttcaatgggaattcaaggtactgaagttgcaaaagagagttcagatattgttatattagatga |
6185174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 458 - 799
Target Start/End: Complemental strand, 4236391 - 4236050
Alignment:
| Q |
458 |
aggtgacaatgttttcactgcaaaagctatagcatttgaatgtggaattcttcaacctaatcaggacacagatgaaacggtggttgaaggcgaacagttt |
557 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |
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| T |
4236391 |
aggtgacaatgttttcactgcaaaagctatagcatttgaatgtggaattcttcaacctaatcaggacacggatgaaacagtggttgaaggcgaacaattt |
4236292 |
T |
|
| Q |
558 |
cgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtgatggcaagatcatctccatttgacaaacttctaatggttcaatgcttaa |
657 |
Q |
| |
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|| ||||| || ||||||||||| || | || ||||| ||||| | ||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
4236291 |
cgtaacttcacacacgaagagaggttggcgaaagttgagaaaatctctgtgatggcaagatcttctccatttgataaacttctaatggtacaatgcttaa |
4236192 |
T |
|
| Q |
658 |
aacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcaccggcattgaaagaagccgatatcggtctttcaatgggaattcaaggtac |
757 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||| |
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| T |
4236191 |
aacaaaaaggtcatgtagttgctgtaaccggagacggaacaaacgatgcaccagcattgaaagaagctgatattggactttcaatgggaattcaaggtac |
4236092 |
T |
|
| Q |
758 |
agaagtagcaaaagagagttcagatattgttatattagatga |
799 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236091 |
tgaagtagcaaaagagagttcagatattgttatattagatga |
4236050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 10 - 359
Target Start/End: Complemental strand, 4236866 - 4236517
Alignment:
| Q |
10 |
ggagtagcagagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagca |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||| | ||| ||||||||||||| | |
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| T |
4236866 |
ggagcagcagagatggtactaagaatgtgttcaaaataccatgatggttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaaagga |
4236767 |
T |
|
| Q |
110 |
ttattcaaggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaagat |
209 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| |||||||| |||| | | ||||||||| | | |||||| |
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| T |
4236766 |
ttattcaaggtatggcggctagtagtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaagat |
4236667 |
T |
|
| Q |
210 |
ggtggtaaaagagaatgatttaacattgttaggacttgtcggcattaaggatccatgtcgcccaggggtgaagacagcggtggaagcttgccaacatgct |
309 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| |
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| T |
4236666 |
ggtggtaaaagacaatggtttaacattgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacgacagtggaagcttgccaacatgct |
4236567 |
T |
|
| Q |
310 |
ggtgtgaatgtcaaaatgatcacaggtattgctaaaatatctcatttatc |
359 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||| ||||||| |
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|
| T |
4236566 |
ggtgtgaatgtcaaaatgattacaggtattactaaaatatcttatttatc |
4236517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 609 - 784
Target Start/End: Complemental strand, 38357184 - 38357009
Alignment:
| Q |
609 |
atggcaagatcatctccatttgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcac |
708 |
Q |
| |
|
|||||||||||||| || | ||||||||| | ||||| |||||||||| | | ||||||||||||||||| || ||||| || || ||||||||||||| |
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| T |
38357184 |
atggcaagatcatcccctatggacaaacttttgatggtgcaatgcttaagaaagaaaggtcatgtagttgcggtcacaggcgacggcacaaacgatgcac |
38357085 |
T |
|
| Q |
709 |
cggcattgaaagaagccgatatcggtctttcaatgggaattcaaggtacagaagtagcaaaagagagttcagatat |
784 |
Q |
| |
|
| || || |||||||| ||||| || ||||| |||||||| ||||| || ||||| || ||||| ||||| ||||| |
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|
| T |
38357084 |
ctgccttaaaagaagctgatataggactttctatgggaatccaaggaaccgaagtcgccaaagaaagttccgatat |
38357009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 693 - 799
Target Start/End: Complemental strand, 19593039 - 19592933
Alignment:
| Q |
693 |
ggaacaaacgatgcaccggcattgaaagaagccgatatcggtctttcaatgggaattcaaggtacagaagtagcaaaagagagttcagatattgttatat |
792 |
Q |
| |
|
|||| ||| |||||| | ||| |||||||||| |||| | ||||| |||| |||||||||||| ||||| ||||||||||| |||||||||||||||| |
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|
| T |
19593039 |
ggaagaaatgatgcatcagcactgaaagaagctaatattgaactttccatggaaattcaaggtaccgaagttgcaaaagagagctcagatattgttatat |
19592940 |
T |
|
| Q |
793 |
tagatga |
799 |
Q |
| |
|
||||||| |
|
|
| T |
19592939 |
tagatga |
19592933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 21847717 - 21847622
Alignment:
| Q |
10 |
ggagtagcagagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaa |
105 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
21847717 |
ggagaagcagagatggtactaagaatgtgttcaagatattacattggctgtggaattttgaaagatcttgacaatggatctatgttgaaattcgaa |
21847622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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