View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8524_high_15 (Length: 239)
Name: NF8524_high_15
Description: NF8524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8524_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 47496402 - 47496170
Alignment:
| Q |
1 |
ctagaagaaattacaaggccgaatacacatatgtaataatattggttcgacagttcatatccaaaatcaaacaagaaaaaccagagaaaagattaaataa |
100 |
Q |
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| T |
47496402 |
ctagaagaaattacaaggtcgaatacacatatgtaataatattggttcgacagttcatatccaaaatcaaaccagaaaaaccagagaaaagattaaataa |
47496303 |
T |
|
| Q |
101 |
acatacgtatataaatatactaacctgtacatgtacgtaccatcagaaagaaagtgacataaatatagtcatttat------------tgcacttttgct |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47496302 |
acatacgtatataaatatactaacctgtacatgtacgtaccatcagaaagaaagtgacataaatatagtcatttattgcaattcctattgcacttttgct |
47496203 |
T |
|
| Q |
189 |
tccattggtttgcttgtggcagaaactagttgg |
221 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
47496202 |
tccattggtttgcttgtggcagaaactatttgg |
47496170 |
T |
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