View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8524_high_3 (Length: 675)

Name: NF8524_high_3
Description: NF8524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8524_high_3
NF8524_high_3
[»] chr6 (1 HSPs)
chr6 (18-670)||(20367473-20368128)


Alignment Details
Target: chr6 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 18 - 670
Target Start/End: Complemental strand, 20368128 - 20367473
Alignment:
Q  18 agtaaataagttcaaataagggcatacaaataagccctgtggagatataaatggttctacaataatcaaatacttacacttttttcaaggttcgggttgg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  20368128 agtaaataagttcaaataagggcatacaaataagccctgtggagatataaatggttctacaataatcaaatactttaacttttttcaaggttcgggttgg 20368029  T
Q  118 taaagaagtgaagaatgatacaaaattagaaattaggaaatgaacttacctttataaatattatgatctatttagtaccgacgctcctgatggcgtttgc 217  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  20368028 taaaggagtgaagaatgatacaaaattagaaattaggaaatgaacctacctttataaatattatgatctatttagtaccaacgctcctgatggcgtgtgc 20367929  T
Q  218 agtatccaacaccgacacatgtaggtgtcggtgtctgacaacataaggttacactcacttgcttttatatttcctttgcaaattattatcaatatcaact 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20367928 agtatccaacaccgacacatgtaggtgtcggtgtctgacaacataaggttacactcacttgcttgtatatttcctttgcaaattattatcaatatcaact 20367829  T
Q  318 tgttagtgtcatatgtggtattcaggttagtgtcagtgcttcattgattatgattcacaatga---cttcnnnnnnnnnnnnnggaggagtggtggtttt 414  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||||             ||||||||||||||| |    
T  20367828 tgttagtgtcgtatgtggtattcaggttagtgtcggtgcttcattgattatgattcacaatgacttcttcttttttcttttttggaggagtggtggttgt 20367729  T
Q  415 caggatttgccataatccttattttgttctgtcatggacataaaatttgtctcatcatagcccatttcatatttgtctcatccttatgtggtggcttgta 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20367728 caggatttgccataatccttattttgttctgtcatggacataaaatttgtctcatcatagcccatttcatatttgtctcatccttatgtggtggcttgta 20367629  T
Q  515 gtggaatttatttttctcacaactttaggaaatttgaaaatgcacatgtcaggaatatttatttcttttgtattttgaatcaaattattaatgattacca 614  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20367628 gtggaatttatttttccaacaactttaggaaatttgaaaatgcacatgtcaggaatatttatttcttttgtattttgaatcaaattattaatgattacca 20367529  T
Q  615 tgataatttgaaaatttgtccttcttcttaatgttgatcagctatttcttctcact 670  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20367528 tgataatttgaaagtttgtccttcttcttaatgttgatcagctatttcttctcact 20367473  T

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