View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8524_high_7 (Length: 408)
Name: NF8524_high_7
Description: NF8524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8524_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 387
Target Start/End: Complemental strand, 45362770 - 45362400
Alignment:
| Q |
17 |
accaatcaatcaatataagcaaacaactattagtaaaaaataattaaaagaaacctttttctggagagacattcaatttaacatcagaaacaagggaatc |
116 |
Q |
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| T |
45362770 |
accaatcaatcaatataagcaaacaactattagtaaaaaataattaaaagaaacctttttctggagagacattcaatttaacatcagaaacaagggaatc |
45362671 |
T |
|
| Q |
117 |
acttgaactccnnnnnnncatatcaagatccttcgttttcttagcagcagcaacgttttttggagagaacatttcggggtttggcgcagggtaattcccc |
216 |
Q |
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||||||||||| ||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45362670 |
acttgaactccaaaaaaacatatgaagatcctccgttttcttagcagcaacaacgttttttggagagaacatttcggggtttggcgcagggtaattcccc |
45362571 |
T |
|
| Q |
217 |
tttgtcgtagacactgaattatcataattacaagtcctcggtggtgttcctttcaaatcagaagcaccaaagttagaattacgactaccacccatcatgg |
316 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45362570 |
tttgtcgtagacattgaattatcataattacaagtcctcggtggtgttcctttcaaatcaaaagcaccaaagttagaattacgactaccacccatcatgg |
45362471 |
T |
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| Q |
317 |
aatgtaaatctgtgtggttgaaactagaccctcttggagttggattccttgatgattgcaaagagtatatc |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45362470 |
aatgtaaatctgtgtggttgaaactagaccctcttggagttggattccttgatgattgcaaagagtatatc |
45362400 |
T |
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