View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8524_low_11 (Length: 384)
Name: NF8524_low_11
Description: NF8524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8524_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 23433574 - 23433749
Alignment:
| Q |
40 |
gacctgtccaatatgttgtttcagcacaaagttattgcattacaccgggaatcatgagaattttaaaacaattatttatttgaaggattgaactctttct |
139 |
Q |
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| T |
23433574 |
gacctgtccaatatgttgtttcagcacaaagttattgcaataggcagggaatcatgagaa-tttaaaacaattattcatttgaaggattaaactctttct |
23433672 |
T |
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| Q |
140 |
gtnnnnnnnnnntcaactaataaggaatttataattagaaagtgggtgaaaaga---ataccgattgaacagcaaggat |
215 |
Q |
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| T |
23433673 |
at--aaaaaaaatcaactaataaagaatttataattagaaagtaggtgaaaagattcataccgattgaacagcaaggat |
23433749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 308 - 384
Target Start/End: Original strand, 23497346 - 23497422
Alignment:
| Q |
308 |
atgacttcgcctccaattgatgtaggctgtaactcatcattataactttcctggccatcttcactttcattgttaga |
384 |
Q |
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| T |
23497346 |
atgacttcacctccaattgatgtaggttgtaactcatcattataatttccctggccatcttcactttcattgttaga |
23497422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 308 - 384
Target Start/End: Original strand, 23476897 - 23476973
Alignment:
| Q |
308 |
atgacttcgcctccaattgatgtaggctgtaactcatcattataactttcctggccatcttcactttcattgttaga |
384 |
Q |
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| T |
23476897 |
atgacttcacctccaattgctgaaggctgtaactcatcattataattttcctggccatcttcaatttcattgttaga |
23476973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 23476733 - 23476861
Alignment:
| Q |
87 |
ggaatcatgagaattttaaaacaattatttatttgaaggattgaactctttctgtnnnnnnnnnntcaactaataaggaatttataattagaaagtgggt |
186 |
Q |
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| T |
23476733 |
ggaatcatgagaattttaaaacaattattcatttgaaggattaaactctttctat---atcaaaataaactaatatggaatttataattagaaagtagat |
23476829 |
T |
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| Q |
187 |
gaaaaga---ataccgattgaacagcaaggat |
215 |
Q |
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| T |
23476830 |
gagaagattcataccgattgaacagcaaggat |
23476861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 23461421 - 23461489
Alignment:
| Q |
18 |
cttagcaagtgcctcnnnnnnngacctgtccaatatgttgtttcagcacaaagttattgcattacaccg |
86 |
Q |
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| T |
23461421 |
cttagcaagtgcctcaaaaaaagacctgcccaatatgttgtttcagcataaagttattgcaatacaccg |
23461489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 23470478 - 23470527
Alignment:
| Q |
88 |
gaatcatgagaattttaaaacaattatttatttgaaggattgaactcttt |
137 |
Q |
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| T |
23470478 |
gaatcatgagaattttaaaacaattcttcaattgaaggatttaaatcttt |
23470527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 23350154 - 23350198
Alignment:
| Q |
40 |
gacctgtccaata-tgttgtttcagcacaaagttattgcattaca |
83 |
Q |
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| T |
23350154 |
gacctgtccaataatgttgtttcagcacaaagtaattgcaataca |
23350198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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