View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8524_low_12 (Length: 355)
Name: NF8524_low_12
Description: NF8524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8524_low_12 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 28730903 - 28730540
Alignment:
| Q |
1 |
ttgatgatctttctatattctctggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcgctacttgtcaatcgccgatcttgagaa |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28730903 |
ttgatgatctttctatattctccggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcgttacttgtcaatcgccgatcttgagaa |
28730804 |
T |
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| Q |
101 |
gcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacgtctggtggaggagtgacattagcaccgatgagaattaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| |
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| T |
28730803 |
gcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtgacattagcaccgatgaggattaac |
28730704 |
T |
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| Q |
201 |
tatgttagggtgaagtttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgcatatcaatcctattggggctgctt |
300 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
28730703 |
tatgttagggtgaaggttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgcatatcaatcctattgcggatgctt |
28730604 |
T |
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| Q |
301 |
atgatactatctta---------ggagcatcggaaggagcaggtgtcggagccagagctgctac |
355 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28730603 |
atgatactatcttaggaggtgaaggagcatcggaaggagcaggtgtcggagccagagctgctac |
28730540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 38121329 - 38120966
Alignment:
| Q |
1 |
ttgatgatctttctatattctctggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcgctacttgtcaatcgccgatcttgagaa |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38121329 |
ttgatgatctttctatattctccggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcattacttgtcaatcgccgatcttgagaa |
38121230 |
T |
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| Q |
101 |
gcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacgtctggtggaggagtgacattagcaccgatgagaattaac |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| ||| |||||||| |||||| |
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| T |
38121229 |
gcttccggttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtgacatcagcgccgatgaggattaac |
38121130 |
T |
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| Q |
201 |
tatgttagggtgaagtttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgcatatcaatcctattggggctgctt |
300 |
Q |
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||||| || || ||| |||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38121129 |
tatgtgagagttaaggttgctgacgtcatccgcaatgtgaagattgttgtgcacagcgtgtatttgccttttccgcatatcaatcctattgcggctgctt |
38121030 |
T |
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| Q |
301 |
atgatactatctta---------ggagcatcggaaggagcaggtgtcggagccagagctgctac |
355 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38121029 |
atgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctac |
38120966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 38608794 - 38609111
Alignment:
| Q |
1 |
ttgatgatctttctatattctctggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcgctacttgtcaatcgccgatcttgagaa |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
38608794 |
ttgatgatctttctatattctccggttctcaatcgtacatcagcaatgtgcgattccatatcataccgaattattacttgtcgatcgccgatcttgagaa |
38608893 |
T |
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| Q |
101 |
gcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacgtctggtggaggagtgacattagcaccgatgagaattaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| ||| |||||||| |||||| |
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| T |
38608894 |
gcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtgacatcagcgccgatgaggattaac |
38608993 |
T |
|
| Q |
201 |
tatgttagggtgaagtttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgcatatcaatcctattggggctgctt |
300 |
Q |
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||||| || || ||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38608994 |
tatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctattgcggctgctt |
38609093 |
T |
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| Q |
301 |
atgatactatcttaggag |
318 |
Q |
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|||||||||| ||||||| |
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| T |
38609094 |
atgatactatattaggag |
38609111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 38793577 - 38793894
Alignment:
| Q |
1 |
ttgatgatctttctatattctctggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcgctacttgtcaatcgccgatcttgagaa |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
38793577 |
ttgatgatctttctatattctccggttctcaatcgtacatcagcaatgtgcgattccatatcataccgaattattacttgtcgatcgccgatcttgagaa |
38793676 |
T |
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| Q |
101 |
gcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacgtctggtggaggagtgacattagcaccgatgagaattaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| ||| |||||||| |||||| |
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| T |
38793677 |
gcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtgacatcagcgccgatgaggattaac |
38793776 |
T |
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| Q |
201 |
tatgttagggtgaagtttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgcatatcaatcctattggggctgctt |
300 |
Q |
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||||| || || ||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38793777 |
tatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctattgcggctgctt |
38793876 |
T |
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| Q |
301 |
atgatactatcttaggag |
318 |
Q |
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|||||||||| ||||||| |
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| T |
38793877 |
atgatactatattaggag |
38793894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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