View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8524_low_13 (Length: 343)
Name: NF8524_low_13
Description: NF8524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8524_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 15186988 - 15187306
Alignment:
| Q |
18 |
ccaagtgtgtgataaagccacgtttgtcccatcactattatctgatcaggattgtgtgccttttatcagctcaaacaacaacnnnnnnnnccactattta |
117 |
Q |
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| T |
15186988 |
ccaagtgtgtgataaagccacgtttgtcccatcactattatctgatcaggattgtgtgccttttatcagctcaaacaacaacaacaaaaaccactattta |
15187087 |
T |
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| Q |
118 |
tatataacaggattgggttcaataaatagaatcatcataatatgccccactatttgaatgtcttcannnnnnncaaacaaagacaaaacaaaacgttcaa |
217 |
Q |
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| T |
15187088 |
tatataacaggattgggttcaataaatagaatcatcataatatgccccactatttgaatgtcttcatttctttcaaacaaagacaaaacaaaacgttcaa |
15187187 |
T |
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| Q |
218 |
tcaaaatggtgacctgtaataaatgaggatgtagaagg--atattagctaaatcacaacacttgacaaaagtaaattgacctaattggtacggaatgaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
15187188 |
tcaaaatggtgacctgtaataaatgaggatgtagaaggatatattagctaaaacacaacacttgacaaaagtaaattggcctaattggtaaggaatgaac |
15187287 |
T |
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| Q |
316 |
tcatatctgacacaggttc |
334 |
Q |
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||||||| ||||||||||| |
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| T |
15187288 |
tcatatccgacacaggttc |
15187306 |
T |
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