View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8524_low_19 (Length: 240)

Name: NF8524_low_19
Description: NF8524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8524_low_19
NF8524_low_19
[»] chr4 (3 HSPs)
chr4 (1-223)||(49351905-49352127)
chr4 (1-223)||(49340541-49340763)
chr4 (5-199)||(19030339-19030523)
[»] chr5 (1 HSPs)
chr5 (1-223)||(32784148-32784370)
[»] chr7 (12 HSPs)
chr7 (47-223)||(29743266-29743442)
chr7 (47-223)||(29750303-29750479)
chr7 (47-223)||(29602815-29602991)
chr7 (97-203)||(35958109-35958215)
chr7 (106-219)||(35939460-35939573)
chr7 (94-203)||(36217471-36217580)
chr7 (94-219)||(36221440-36221565)
chr7 (97-203)||(35977564-35977670)
chr7 (97-203)||(35998976-35999082)
chr7 (94-129)||(36226002-36226037)
chr7 (169-219)||(35982204-35982254)
chr7 (169-219)||(36003616-36003666)
[»] chr1 (2 HSPs)
chr1 (73-221)||(35157441-35157589)
chr1 (94-134)||(18125814-18125854)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 49352127 - 49351905
Alignment:
Q  1 tttgtaaagttctcttggtgaattgggttaggatcagcagcagaaccactaacactagctgaattgaggattttaacaagcagattcttaagttcaaaat 100  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49352127 tttgtaaagctctcttggtgaattgggttaggatcagcagaagaaccactaacactagctgcattgaggattttaacaagcagattcttaagttcaaaat 49352028  T
Q  101 catcagagacacacacccacatcttcaatggaaaagtctcatctaaactcttctcattaaacactgcctttgcaagtgtagtctttcctaatcctccaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  49352027 catcagagacacacacccacatcttcaatggaaaagtctcatctaaactcttatcattaaacactgcctttgcaagtgtagtctttcctaatcctccaat 49351928  T
Q  201 tccaacaacaggaataacagaga 223  Q
    |||||||||||||||||||||||    
T  49351927 tccaacaacaggaataacagaga 49351905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 49340763 - 49340541
Alignment:
Q  1 tttgtaaagttctcttggtgaattgggttaggatcagcagcagaaccactaacactagctgaattgaggattttaacaagcagattcttaagttcaaaat 100  Q
    |||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  49340763 tttgtatagttctcttggtgaattgggttaggaccaagagcagaaccactaacactagctgaattgaggattttaacaagcagattctcaagttcaaaat 49340664  T
Q  101 catcagagacacacacccacatcttcaatggaaaagtctcatctaaactcttctcattaaacactgcctttgcaagtgtagtctttcctaatcctccaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||| |||||||||||||||||    
T  49340663 catcagagacacacacccacatcttcaatggaaaagtctcatctaaactcttatcattaaacacgacctttgcaagtgtagtttttcctaatcctccaat 49340564  T
Q  201 tccaacaacaggaataacagaga 223  Q
    |||||||| ||||||||||||||    
T  49340563 tccaacaataggaataacagaga 49340541  T

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Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 19030523 - 19030339
Alignment:
Q  5 taaagttctcttggtgaattgggttaggatcagcagcagaaccactaacactagctgaattgaggattttaacaagcagattcttaagttcaaaatcatc 104  Q
    |||| ||||||||||||||||| |||| |  |||| |||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||         
T  19030523 taaacttctcttggtgaattggcttagtaggagcaacagaaccactaacactagctgaattgagtattttaacaagcagatttgcaagttcaaaa----- 19030429  T
Q  105 agagacacacacccacatcttcaatggaaaagtctcatctaaactcttctcattaaacactgcctttgcaagtgtagtctttcctaatcctccaa 199  Q
         |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||    
T  19030428 -----cacacacccacatcttcaatggaaaagtctcatctaaactcttaacattaaacactgcctttgcaagtgtagtttttcctaatcctccaa 19030339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 32784148 - 32784370
Alignment:
Q  1 tttgtaaagttctcttggtgaattgggttaggatcagcagcagaaccactaacactagctgaattgaggattttaacaagcagattcttaagttcaaaat 100  Q
    |||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||| |||||||||||||||| ||||||    
T  32784148 tttgtatagttcgcttggtgaattgggttaggaccagtagcagaaccactaacactagctgcatttaggattttaagaagcagattcttaagtccaaaat 32784247  T
Q  101 catcagagacacacacccacatcttcaatggaaaagtctcatctaaactcttctcattaaacactgcctttgcaagtgtagtctttcctaatcctccaat 200  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  32784248 catcagagacacaaacccacatcttcaatgaaaaagtctcatctaaactcttatcattaaacactgcctttgaaagtgtagtttttcctaatcctccaat 32784347  T
Q  201 tccaacaacaggaataacagaga 223  Q
    |||||||| ||||||||||||||    
T  32784348 tccaacaataggaataacagaga 32784370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 29743442 - 29743266
Alignment:
Q  47 cactaacactagctgaattgaggattttaacaagcagattcttaagttcaaaatcatcagagacacacacccacatcttcaatggaaaagtctcatctaa 146  Q
    ||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||    
T  29743442 cactaacgctagctgaattgatgattttaacaagcagatgctgaagttcaaaatcatcggagacacacacccacatctttaatggaaaagtctcgtctaa 29743343  T
Q  147 actcttctcattaaacactgcctttgcaagtgtagtctttcctaatcctccaattccaacaacaggaataacagaga 223  Q
    |||||| ||||| ||||||| ||||||||| ||||||||||| || |||||||||||||||| ||||||||||||||    
T  29743342 actcttatcattgaacactgtctttgcaagcgtagtctttcccaagcctccaattccaacaataggaataacagaga 29743266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 29750479 - 29750303
Alignment:
Q  47 cactaacactagctgaattgaggattttaacaagcagattcttaagttcaaaatcatcagagacacacacccacatcttcaatggaaaagtctcatctaa 146  Q
    ||||||| ||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||    
T  29750479 cactaacgctagctgaattgaggattttaacgagcagatgctgaagttcaaaatcatcggagacacacacccacatctttaatggaaatgtctcgtctaa 29750380  T
Q  147 actcttctcattaaacactgcctttgcaagtgtagtctttcctaatcctccaattccaacaacaggaataacagaga 223  Q
    |||||| ||||| ||||| | ||||||||||||||||||||| || |||||||||||||||| ||||||||||||||    
T  29750379 actcttatcattgaacaccgtctttgcaagtgtagtctttcccaagcctccaattccaacaataggaataacagaga 29750303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 47 - 223
Target Start/End: Original strand, 29602815 - 29602991
Alignment:
Q  47 cactaacactagctgaattgaggattttaacaagcagattcttaagttcaaaatcatcagagacacacacccacatcttcaatggaaaagtctcatctaa 146  Q
    ||||||| ||||||||||||||||||||||  ||||||| || ||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||    
T  29602815 cactaacgctagctgaattgaggattttaatgagcagatgctgaagttcaaaatcatcggagacacacacccacatctttaatgggaaagtctcgtctaa 29602914  T
Q  147 actcttctcattaaacactgcctttgcaagtgtagtctttcctaatcctccaattccaacaacaggaataacagaga 223  Q
    |||||| ||||| ||||| | ||||||||||||||||||||| || |||||||||||||||| ||||||||||||||    
T  29602915 actcttatcattgaacaccgtctttgcaagtgtagtctttcccaagcctccaattccaacaataggaataacagaga 29602991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 203
Target Start/End: Original strand, 35958109 - 35958215
Alignment:
Q  97 aaatcatcagagacacacacccacatcttcaa-tggaaaagtctcatctaaactcttctcattaaacactgcctttgcaagtgtagtctttcctaatcct 195  Q
    |||||||| |||| |||||||||||||||||| ||||||||| | ||| |  ||||| ||||| ||||| | |||||||||||| |||||||| || |||    
T  35958109 aaatcatcggagatacacacccacatcttcaactggaaaagt-tgatccatcctcttatcattgaacaccgactttgcaagtgttgtctttcccaaacct 35958207  T
Q  196 ccaattcc 203  Q
    ||||||||    
T  35958208 ccaattcc 35958215  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 35939460 - 35939573
Alignment:
Q  106 gagacacacacccacatcttcaat-ggaaaagtctcatctaaactcttctcattaaacactgcctttgcaagtgtagtctttcctaatcctccaattcca 204  Q
    |||||||||| ||||||||||||| |||||||| | ||  |  ||||| ||||| |||||   |||||||||||| ||||| |||||||||||||||||     
T  35939460 gagacacacaaccacatcttcaattggaaaagt-tgattcaccctcttatcattgaacaccaactttgcaagtgtggtcttccctaatcctccaattccc 35939558  T
Q  205 acaacaggaataaca 219  Q
    ||||  |||||||||    
T  35939559 acaatgggaataaca 35939573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 36217580 - 36217471
Alignment:
Q  94 tcaaaatcatcagagacacacacccacatcttcaatggaaaagtctcatctaaactcttctcattaaacactgcctttgcaagtgtagtctttcctaatc 193  Q
    ||||||||| ||||||||||  |||||||||||||| |||||   |||||||  ||||| |||||  ||||    ||||||||||| ||||| || ||||    
T  36217580 tcaaaatcaacagagacacatgcccacatcttcaattgaaaaacttcatctatcctcttatcattgtacaccaattttgcaagtgtggtcttccccaatc 36217481  T
Q  194 ctccaattcc 203  Q
    ||||||||||    
T  36217480 ctccaattcc 36217471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 219
Target Start/End: Complemental strand, 36221565 - 36221440
Alignment:
Q  94 tcaaaatcatcagagacacacacccacatcttcaatggaaaagtctcatctaaactcttctcattaaacactgcctttgcaagtgtagtctttcctaatc 193  Q
    ||||||||||  |||||||||||||| ||||||||| | ||| | |||||||  ||||| ||||| |||||   | |||||||||| ||||| || || |    
T  36221565 tcaaaatcattggagacacacacccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagc 36221466  T
Q  194 ctccaattccaacaacaggaataaca 219  Q
    | ||||||||||| |  |||||||||    
T  36221465 caccaattccaactatgggaataaca 36221440  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 203
Target Start/End: Original strand, 35977564 - 35977670
Alignment:
Q  97 aaatcatcagagacacacacccacatcttcaa-tggaaaagtctcatctaaactcttctcattaaacactgcctttgcaagtgtagtctttcctaatcct 195  Q
    ||||||||||||| |||||||||||||||||| ||||||||| | ||| |  ||||| ||||| ||||| | ||||||||  || ||||| || || |||    
T  35977564 aaatcatcagagatacacacccacatcttcaactggaaaagt-tgatccatcctcttatcattgaacaccgactttgcaatggtggtcttccccaaacct 35977662  T
Q  196 ccaattcc 203  Q
    ||||||||    
T  35977663 ccaattcc 35977670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 203
Target Start/End: Original strand, 35998976 - 35999082
Alignment:
Q  97 aaatcatcagagacacacacccacatcttcaa-tggaaaagtctcatctaaactcttctcattaaacactgcctttgcaagtgtagtctttcctaatcct 195  Q
    ||||||||||||| |||||||||||||||||| ||||||||| | ||| |  ||||| ||||| ||||| | ||||||||  || ||||| || || |||    
T  35998976 aaatcatcagagatacacacccacatcttcaactggaaaagt-tgatccatcctcttatcattgaacaccgactttgcaatggtggtcttccccaaacct 35999074  T
Q  196 ccaattcc 203  Q
    ||||||||    
T  35999075 ccaattcc 35999082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 129
Target Start/End: Original strand, 36226002 - 36226037
Alignment:
Q  94 tcaaaatcatcagagacacacacccacatcttcaat 129  Q
    |||||||||||||||| |||||||||||||||||||    
T  36226002 tcaaaatcatcagagatacacacccacatcttcaat 36226037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 35982204 - 35982254
Alignment:
Q  169 tttgcaagtgtagtctttcctaatcctccaattccaacaacaggaataaca 219  Q
    |||||||||||||||||||| || ||||||||||| ||||  |||||||||    
T  35982204 tttgcaagtgtagtctttcccaaacctccaattcccacaatgggaataaca 35982254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 36003616 - 36003666
Alignment:
Q  169 tttgcaagtgtagtctttcctaatcctccaattccaacaacaggaataaca 219  Q
    |||||||||||||||||||| || ||||||||||| ||||  |||||||||    
T  36003616 tttgcaagtgtagtctttcccaaacctccaattcccacaatgggaataaca 36003666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 35157589 - 35157441
Alignment:
Q  73 ttaacaagcagattcttaagttcaaaatcatcagagacacacacccacatcttcaatggaaaagtctcatctaaactcttctcattaaacactgcctttg 172  Q
    |||||||||||||||||||  ||||||||||| ||||| || | ||||||||| ||||||||||  ||| ||| |||||| |||||||||||  | ||||    
T  35157589 ttaacaagcagattcttaacatcaaaatcatccgagacgcatatccacatctttaatggaaaagagtcaactacactcttatcattaaacacaacttttg 35157490  T
Q  173 caagtgtagtctttcctaatcctccaattccaacaacaggaataacaga 221  Q
    |||||||||||||||| |  ||||||| ||| |||| || || ||||||    
T  35157489 caagtgtagtctttcccatacctccaagtcccacaatagcaacaacaga 35157441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 18125814 - 18125854
Alignment:
Q  94 tcaaaatcatcagagacacacacccacatcttcaatggaaa 134  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  18125814 tcaaaattatcagagacacacacccacatcttcaattgaaa 18125854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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