View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8524_low_2 (Length: 764)
Name: NF8524_low_2
Description: NF8524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8524_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 247 - 758
Target Start/End: Complemental strand, 45855676 - 45855168
Alignment:
| Q |
247 |
atcatcaatggatagagaaacaaattgtccaaataaacttacaagagtgtgtccagtttcaacttaagtaatcttatgtggatgtgctctattgcaagaa |
346 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45855676 |
atcatcaatggatagagaaacaaattgttcaaataaacttacaagaatgtgtccagtttcaacttaagtaatcttatgtggatgtgctctattgcaagaa |
45855577 |
T |
|
| Q |
347 |
ttgatctgttggttaatatttcacagtaatgtgtgtggcttcttattaatcacatgttggaccaataagaattaacttctagcttattatattaggatgt |
446 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
45855576 |
ttaatctgttggttaatatttcacagtaatgtgtgtggcttcttattaatcacatgttggaccaataagaattaacttctagc---ttatattaggatat |
45855480 |
T |
|
| Q |
447 |
tatgttcacagctgtgattaaagttaattcccatcatgcaatataagttaaactttgcagcttataggtacttctagctttgcaagattgaaggccgtga |
546 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45855479 |
tatgttcacagctgtgattaaagttaattcacatcatgcaatataagttaaactttgcagcttataggtacttctagctttgcaagattgaaggccgtga |
45855380 |
T |
|
| Q |
547 |
gatttttgaagccacgcagattatgcagacaataaaggatactgatttcaacaaattaatcannnnnnngtaaacaaaaaacaaattaaacgaaagcagt |
646 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
45855379 |
gatttttgaagccacacacattatgcagacaataaaggatactgaattcaacaaattaatcatttatttgtaaacaaaaaacaaattaaacaaaagcagt |
45855280 |
T |
|
| Q |
647 |
aaatgtcattttatttaatattgaattcttataagaaccgtcaattacacataatgtcactctttattactaatgatagttcaagtattgaacaccttat |
746 |
Q |
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| T |
45855279 |
aaatgtcattttatttaatattgagttcttataagaaccgtcagttacacataatgtcactctttattactattgatagttcaagtattgaacaccttat |
45855180 |
T |
|
| Q |
747 |
tttaacacgaaa |
758 |
Q |
| |
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|||||||||||| |
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| T |
45855179 |
tttaacacgaaa |
45855168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 45855904 - 45855709
Alignment:
| Q |
19 |
atggaggccaagttacaggaaattaagtcgcagaaagaagctgcaaagttaagaaaatcgtttaaagcaggattggaaccatctgcacccatacccgatg |
118 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45855904 |
atggaggccaagttacaggaaattaagtcgcggaaagaagctgcaaagttaagaaaatcgtttaaagcaggattggaaccatctgcacccatacccgatg |
45855805 |
T |
|
| Q |
119 |
gaataattaacttcttgcttcaaaattcgccatcggcacaagtttacatggtagattgctgagttttcaacttcttaaaagagattgttataactg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45855804 |
gaataattaacttcttgcttcaaaattcgccatcggcacaagtttacatggtagattgctgagtttgcaacttcttaaaagagattgttataactg |
45855709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 45880945 - 45880768
Alignment:
| Q |
19 |
atggaggccaagttacaggaaattaagtcgcagaaagaagctgcaaagttaagaaaatcgtttaaagcaggattggaaccatctgcacccatacccgatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45880945 |
atggaggccaagttacaggaaattaagtcgcggaaagaagctgcaaagttaagaaaatcgtttaaagcaggattggaaccatctgcacccatacctgatg |
45880846 |
T |
|
| Q |
119 |
gaataattaacttcttgcttcaaaattcgccatcggcacaagtttacatggtagattgctgagttttcaacttcttaa |
196 |
Q |
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| T |
45880845 |
gaataattaacttcttgcttcaaaattcgccatcggcacaagtttacatggtagattgctgagttttcaacttcttaa |
45880768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 247 - 493
Target Start/End: Complemental strand, 45880724 - 45880476
Alignment:
| Q |
247 |
atcatcaatggatagagaaacaaattgtccaaataaacttacaagagtgtgtccagtttc-------aacttaagtaatcttatgtggatgtgctctatt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| || ||||||||| || || ||||||||||||| ||| ||||||| |
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| T |
45880724 |
atcatcaatggatagagaaacaaattgttcaaataaacttacatgattgtgtccagactccagatttaaattaagtaatcttaagtga--gtgctcttca |
45880627 |
T |
|
| Q |
340 |
gcaagaattgatctgttggttaatatttcacagtaatgtgtgtggcttcttattaatcacatgttggaccaataagaattaacttctagcttattatatt |
439 |
Q |
| |
|
|||| || | || |||||||| ||||| |||| | || |||| |||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| |
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| T |
45880626 |
gcaaaaaataatttgttggttgatattccacaattatatgtgcggcttcttattaatcacatgttggaccaataaaaattaacttgtagc---ttatatt |
45880530 |
T |
|
| Q |
440 |
aggatgttatgttcacagctgtgattaaagttaattcccatcatgcaatataag |
493 |
Q |
| |
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|||||||| |||||||| | | |||| | ||| |||||| ||||||| ||||| |
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| T |
45880529 |
aggatgttttgttcacaaccgagatttgatttagttcccagcatgcaaaataag |
45880476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 45910123 - 45910048
Alignment:
| Q |
87 |
aggattggaaccatctgcacccatacccgatggaataattaacttcttgcttcaaaattcgccatcggcacaagtt |
162 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||||| | |||||||||||| |||||||||||| ||| ||||| |
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| T |
45910123 |
aggattggaaccatcttcactcatacctgatggaatattggacttcttgcttcgaaattcgccatcagcagaagtt |
45910048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 656 - 712
Target Start/End: Complemental strand, 2665557 - 2665501
Alignment:
| Q |
656 |
tttatttaatattgaattcttataagaaccgtcaattacacataatgtcactcttta |
712 |
Q |
| |
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|||||||| | ||||| ||||| || |||| |||||||||||||||||||||||||| |
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| T |
2665557 |
tttatttatttttgaactcttacaataaccatcaattacacataatgtcactcttta |
2665501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 8e-23; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 38141139 - 38141044
Alignment:
| Q |
51 |
gaaagaagctgcaaagttaagaaaatcgtttaaagcaggattggaaccatctgcacccatacccgatggaataattaacttcttgcttcaaaattc |
146 |
Q |
| |
|
|||||||| ||| |||||| ||||||| |||||||| |||||||||||||||||||||||||| ||||||||| | |||||||| |||||||||| |
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|
| T |
38141139 |
gaaagaaggtgctaagttacgaaaatcatttaaagctggattggaaccatctgcacccatacctgatggaatagtggacttcttgattcaaaattc |
38141044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 7975881 - 7975749
Alignment:
| Q |
30 |
gttacaggaaattaagtcgcagaaagaagctgcaaagttaagaaaatcgtttaaagcaggattggaaccatctgcacccatacccgatggaataattaac |
129 |
Q |
| |
|
||||||| |||| ||||| ||||||||||||| |||||| ||||| | |||| || |||||| |||||||| ||| |||||| ||||||||| | || |
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|
| T |
7975881 |
gttacagaaaatcaagtcaaagaaagaagctgctaagttacgaaaagcatttagagatggattgaaaccatcttcactcatacctgatggaatagtggac |
7975782 |
T |
|
| Q |
130 |
ttcttgcttcaaaattcgccatcggcacaagtt |
162 |
Q |
| |
|
||||||||||||||||| || |||||| ||||| |
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| T |
7975781 |
ttcttgcttcaaaattcaccttcggcaaaagtt |
7975749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 7895931 - 7895983
Alignment:
| Q |
94 |
gaaccatctgcacccatacccgatggaataattaacttcttgcttcaaaattc |
146 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | | ||||||||||||||||| |
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| T |
7895931 |
gaaccatctgcacccatacctgatggaatagtggatttcttgcttcaaaattc |
7895983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 710
Target Start/End: Original strand, 19261921 - 19261975
Alignment:
| Q |
656 |
tttatttaatattgaattcttataagaaccgtcaattacacataatgtcactctt |
710 |
Q |
| |
|
|||||||||||||||| || | | ||||| |||||||||||||||||||||||| |
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|
| T |
19261921 |
tttatttaatattgaactcattcacgaaccatcaattacacataatgtcactctt |
19261975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 44500323 - 44500204
Alignment:
| Q |
43 |
aagtcgcagaaagaagctgcaaagttaagaaaatcgtttaaagcaggattggaaccatctgcacccatacccgatggaataattaacttcttgcttcaaa |
142 |
Q |
| |
|
||||| |||| ||||||||||| | || ||||| | |||||| ||||||| ||||||| |||| |||| ||| ||||| | ||||||||||||||| |
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|
| T |
44500323 |
aagtcacagagagaagctgcaaggatacgaaaagcacttaaagaaggattgagaccatcttcacctgtacctgatagaatagtggacttcttgcttcaaa |
44500224 |
T |
|
| Q |
143 |
attcgccatcggcacaagtt |
162 |
Q |
| |
|
|||| |||| |||| ||||| |
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|
| T |
44500223 |
attcaccattggcagaagtt |
44500204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 36635906 - 36635813
Alignment:
| Q |
52 |
aaagaagctgcaaagttaagaaaatcgtttaaagcaggattggaaccatctgcacccatacccgatggaataattaacttcttgcttcaaaattcgc |
148 |
Q |
| |
|
||||||||||| ||||||||||| | ||||||||| | ||||||||| || |||||||| ||||||||| || | ||||||| |||||| |||| |
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|
| T |
36635906 |
aaagaagctgccaagttaagaaaggcttttaaagcacgtttggaaccacct---cccatacctgatggaatagttgaattcttgcgtcaaaactcgc |
36635813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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