View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8524_low_21 (Length: 235)

Name: NF8524_low_21
Description: NF8524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8524_low_21
NF8524_low_21
[»] chr8 (1 HSPs)
chr8 (18-235)||(1881656-1881873)
[»] chr6 (37 HSPs)
chr6 (18-217)||(20653358-20653556)
chr6 (18-229)||(12052038-12052250)
chr6 (18-229)||(20633540-20633752)
chr6 (18-196)||(20652301-20652478)
chr6 (25-183)||(12051250-12051407)
chr6 (18-196)||(20640151-20640328)
chr6 (21-219)||(20652678-20652875)
chr6 (117-229)||(12052614-12052727)
chr6 (35-126)||(12050373-12050464)
chr6 (120-229)||(12042308-12042417)
chr6 (18-93)||(12051488-12051563)
chr6 (117-215)||(20632942-20633040)
chr6 (35-227)||(20639875-20640071)
chr6 (70-196)||(20640651-20640776)
chr6 (133-229)||(20653185-20653281)
chr6 (124-227)||(20652118-20652221)
chr6 (117-219)||(20633214-20633315)
chr6 (59-222)||(12051634-12051793)
chr6 (59-222)||(20633295-20633454)
chr6 (117-196)||(20640473-20640552)
chr6 (17-222)||(12049995-12050197)
chr6 (70-181)||(12050183-12050293)
chr6 (59-222)||(20633721-20633881)
chr6 (173-225)||(20640390-20640442)
chr6 (173-225)||(20652541-20652593)
chr6 (49-196)||(20652557-20652703)
chr6 (59-222)||(12052485-12052645)
chr6 (117-229)||(12051763-12051874)
chr6 (18-82)||(12052335-12052399)
chr6 (84-196)||(20650850-20650961)
chr6 (35-79)||(20650950-20650994)
chr6 (49-93)||(20653241-20653285)
chr6 (59-196)||(20640043-20640179)
chr6 (42-87)||(20647965-20648010)
chr6 (18-62)||(12042187-12042231)
chr6 (183-219)||(12042706-12042742)
chr6 (124-196)||(12050971-12051043)
[»] scaffold0036 (3 HSPs)
scaffold0036 (51-167)||(110709-110825)
scaffold0036 (21-180)||(110491-110649)
scaffold0036 (18-57)||(110464-110503)
[»] chr4 (6 HSPs)
chr4 (18-229)||(12999340-12999548)
chr4 (21-196)||(12999085-12999259)
chr4 (41-196)||(12999669-12999823)
chr4 (49-196)||(12999234-12999380)
chr4 (70-196)||(12999818-12999943)
chr4 (152-229)||(12999924-12999999)
[»] scaffold0173 (7 HSPs)
scaffold0173 (44-226)||(34378-34559)
scaffold0173 (21-229)||(34087-34293)
scaffold0173 (120-226)||(34656-34762)
scaffold0173 (117-229)||(34514-34626)
scaffold0173 (42-107)||(32019-32084)
scaffold0173 (77-182)||(33995-34099)
scaffold0173 (59-196)||(34268-34405)
[»] chr2 (4 HSPs)
chr2 (36-172)||(24512911-24513046)
chr2 (20-111)||(24513477-24513568)
chr2 (35-196)||(24513036-24513196)
chr2 (71-194)||(24513626-24513750)
[»] chr3 (2 HSPs)
chr3 (48-196)||(9098292-9098439)
chr3 (73-196)||(9098726-9098848)
[»] scaffold1937 (1 HSPs)
scaffold1937 (61-196)||(64-198)
[»] scaffold0113 (2 HSPs)
scaffold0113 (41-196)||(47948-48102)
scaffold0113 (133-196)||(48097-48160)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 1881873 - 1881656
Alignment:
Q  18 caaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1881873 caaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggc 1881774  T
Q  118 aagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1881773 aagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatca 1881674  T
Q  218 aacttgtaaccactctct 235  Q
    ||||||||||||||||||    
T  1881673 aacttgtaaccactctct 1881656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 20653358 - 20653556
Alignment:
Q  18 caaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggc 117  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||  | |    
T  20653358 caaatattatgttacgcatcaaaggacatcgagggacaaattcaaacttcatacttatcaaacttctaaccatatagactacaatctcatttttcgcgac 20653457  T
Q  118 aagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatca 217  Q
    ||||||||||||| ||||||||||||||||||| |||| ||||||||||||| |||| || |||||||| |||||||| |||||||||| ||||||||||    
T  20653458 aagggtcatttcacgactttcattttaccgaatttaaaacaaaataggctcaaatataatatttcaaattaagggacaagttcaatctt-ccatttatca 20653556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 12052250 - 12052038
Alignment:
Q  18 caaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggc 117  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||| |||||||||  | |    
T  12052250 caaatattatgttactcatcataggacatcgagggacaaattcaaccttcatatttatcaaactattaaccatatagagtacaatttcatttttcgcgac 12052151  T
Q  118 aagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatca 217  Q
    || |||| ||||||||||| ||||||||||||| |||| ||||||||||| |||||||||||| |||||||  ||||| |||||| ||| ||||||||||    
T  12052150 aaaggtcttttcaagacttacattttaccgaatttaaaacaaaataggctaacatatcatgttccaaatcagtggacaagttcaacctttccatttatca 12052051  T
Q  218 aac-ttgtaacca 229  Q
    ||| |||||||||    
T  12052050 aacattgtaacca 12052038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 20633540 - 20633752
Alignment:
Q  18 caaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggc 117  Q
    |||||||  ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||| |||||||||  | |    
T  20633540 caaatatcttgttactcatcaaagaacatcgagggacaaattcaaccttcatatttatcaaactattaaccatatagagtacaatttcatttttcgcgac 20633639  T
Q  118 aagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatca 217  Q
    ||||||| ||||||||||| ||||||||||||| |||| ||||||||||| | |||||||||| |||||||  ||||| |||||| ||||||||||||||    
T  20633640 aagggtcttttcaagacttacattttaccgaatttaaaacaaaataggctaatatatcatgttccaaatcagtggacaagttcaaccttcccatttatca 20633739  T
Q  218 aac-ttgtaacca 229  Q
    ||| |||||||||    
T  20633740 aacattgtaacca 20633752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 20652301 - 20652478
Alignment:
Q  18 caaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggc 117  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||| ||| ||||||||||||   | |    
T  20652301 caaatattatgttacacatcaaaggacatcgagggacaaattcaaccttcatatttatcaaacatctaaccatataggctaaaatctcattttt-gcgac 20652399  T
Q  118 aagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacat 196  Q
    |||||||||| ||| ||||||||||||||||||  ||| | ||||||| ||||||||||| ||||  ||||||||||||    
T  20652400 aagggtcattccaatactttcattttaccgaatacaaaaccaaataggttcacatatcatatttcgcatcaagggacat 20652478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 25 - 183
Target Start/End: Complemental strand, 12051407 - 12051250
Alignment:
Q  25 tatgttactcatcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtc 124  Q
    |||||||| || ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| || ||||||||||| |||||  | ||||||||    
T  12051407 tatgttacgcaacaaaggacatcgagggaaaaattcaaccttcatagttatcaaacttttaaccatacaggctacaatctca-ttttcgcgacaagggtc 12051309  T
Q  125 atttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttca 183  Q
    |||||||||||||||||||||||||| |||| | ||||| | ||| |||||||||||||    
T  12051308 atttcaagactttcattttaccgaatttaaagccaaatatgttcaaatatcatgtttca 12051250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 20640151 - 20640328
Alignment:
Q  18 caaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggc 117  Q
    ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||| | ||||||||||| |||  |||||||||||   |      
T  20640151 caaatattatgttacacatcaaaggacatcgaaggacaaattcaaccttcatatttatcaaacatctaaccatataggctaatatctcattttt-gcgat 20640249  T
Q  118 aagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacat 196  Q
    || ||||||| ||| ||||||||||||||||||  ||| | ||||||| ||||||||||| ||||  ||||||||||||    
T  20640250 aaaggtcattccaatactttcattttaccgaatacaaaaccaaataggttcacatatcatatttctcatcaagggacat 20640328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 20652678 - 20652875
Alignment:
Q  21 atattatgttactcatcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaag 120  Q
    |||||||||| | |||||| ||||||| || |||||  |||| ||||  ||||||||||||| ||  |||||| || | || |||||||| || | ||||    
T  20652678 atattatgtttcgcatcaagggacatcaagagacaagttcaaacttccgatttatcaaacttgtaggcatatataccaaaaactcatttt-cacgacaag 20652776  T
Q  121 ggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatcaaa 219  Q
    ||||||| ||| |||||||||||  ||||| |||| ||||||||| ||||||| ||||||||||||||||||||| |||||||||| | ||||| ||||    
T  20652777 ggtcattccaatactttcattttttcgaatttaaaacaaaataggttcacataccatgtttcaaatcaagggacaagttcaatctttcaatttaacaaa 20652875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 12052727 - 12052614
Alignment:
Q  117 caagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatc 216  Q
    |||||||| ||||||||||| ||||||||||||| |||| ||||||||||| | |||||||||| |||||||  ||||| |||||| |||||||||||||    
T  12052727 caagggtcttttcaagacttacattttaccgaatttaaaacaaaataggctaatatatcatgttccaaatcagtggacaagttcaaccttcccatttatc 12052628  T
Q  217 aaac-ttgtaacca 229  Q
    |||| |||||||||    
T  12052627 aaacattgtaacca 12052614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 12050464 - 12050373
Alignment:
Q  35 atcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtcat 126  Q
    |||||| |||||| ||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||  | ||||||||||    
T  12050464 atcaaatgacatcaagggacaagttcaaccttcatatttatcaaacttctaaccatatagactacaatctcatttttcgcgacaagggtcat 12050373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 12042417 - 12042308
Alignment:
Q  120 gggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatcaaa 219  Q
    |||||||| ||| |||||||||||||||||| | || | ||||||| ||||||||||||||||  ||||||||||||| |||| ||||  |||||| |||    
T  12042417 gggtcattccaatactttcattttaccgaatatgaaactaaataggatcacatatcatgtttcgcatcaagggacatggtcaaccttcatatttattaaa 12042318  T
Q  220 cttgtaacca 229  Q
    ||||||||||    
T  12042317 cttgtaacca 12042308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 12051563 - 12051488
Alignment:
Q  18 caaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatata 93  Q
    |||||||  ||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| ||||||||||    
T  12051563 caaatatcttgttactcatcaaagaacatcgagggacaaattgaaccttcatatttatcaaacttgtaaccatata 12051488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 20632942 - 20633040
Alignment:
Q  117 caagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttat 215  Q
    |||||||| ||||||||||| ||||||||||||| |||| |||||||| || ||||||| |||| |||||||  ||||| |||||| ||||||||||||    
T  20632942 caagggtcttttcaagacttacattttaccgaatttaaaacaaaatagactaacatatcgtgttccaaatcagtggacaagttcaaccttcccatttat 20633040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 227
Target Start/End: Original strand, 20639875 - 20640071
Alignment:
Q  35 atcaaaggacatcgagggacaaactcaaccttcatatttatcaaac-----ttttaaccatatagactacaatctcatttttcatggcaagggtcatttc 129  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||      || |||| |||||| ||| |||||| |||| |  | |||||  |||| |    
T  20639875 atcaaaggacatcaagggacaacttcaaccttcatatttatcaaatctaaattgtaactatataggctaaaatctcgtttt-cgcgacaaggaacattcc 20639973  T
Q  130 aagactttcattttaccgaat-ctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatcaaacttgtaac 227  Q
    || |||||||||||||||||| | |||||||| |||| |||||||||||| |||  |||| ||||||||||||| ||||  |||||| |||||| ||||    
T  20639974 aatactttcattttaccgaatacgaaaccaaa-taggttcacatatcatgcttcgcatcaggggacatgttcaaccttcatatttatgaaacttctaac 20640071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 196
Target Start/End: Original strand, 20640651 - 20640776
Alignment:
Q  70 atttatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctca 169  Q
    ||||| ||||||| ||  ||||||||| | ||||||||||||   | ||||||||||| ||| |||||||||||||||||| |||| | ||||||| |||    
T  20640651 atttaccaaacttgtaggcatatagaccaaaatctcatttttgc-gacaagggtcattccaatactttcattttaccgaatataaaaccaaataggttca 20640749  T
Q  170 catatcatgtttcaaatcaagggacat 196  Q
    |||||||| ||||  ||||||||||||    
T  20640750 catatcatatttcgcatcaagggacat 20640776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 20653185 - 20653281
Alignment:
Q  133 actttcattttaccgaat-ctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatcaaacttgtaacca 229  Q
    |||||||||||||||||| | |||||||| |||| ||||||||||||||||  || |||||||||| |||| ||||  ||||||||||||||||||||    
T  20653185 actttcattttaccgaatacgaaaccaaa-taggttcacatatcatgtttcgcataaagggacatgctcaaccttcatatttatcaaacttgtaacca 20653281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 227
Target Start/End: Original strand, 20652118 - 20652221
Alignment:
Q  124 catttcaagactttcattttaccgaat-ctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatcaaactt 222  Q
    |||| ||| |||||||||||||||||| | ||| |||| |||| ||||||||||||||||  |||||||||||||||||| ||||  |||||| ||||||    
T  20652118 cattccaatactttcattttaccgaatacgaaatcaaa-taggttcacatatcatgtttcgcatcaagggacatgttcaaccttcatatttatgaaactt 20652216  T
Q  223 gtaac 227  Q
    |||||    
T  20652217 gtaac 20652221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 20633214 - 20633315
Alignment:
Q  117 caagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatc 216  Q
    ||||||||||| ||| |||||||||||||||||| |||| |||||||||  || ||||||||||||  ||||| ||||| |||||| ||||  |||||||    
T  20633214 caagggtcattccaatactttcattttaccgaatttaaa-caaaataggtacaaatatcatgtttcgcatcaaaggacaagttcaaccttcaaatttatc 20633312  T
Q  217 aaa 219  Q
    |||    
T  20633313 aaa 20633315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 222
Target Start/End: Complemental strand, 12051793 - 12051634
Alignment:
Q  59 tcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtcatttcaagactttcattttaccgaatctaaacca 158  Q
    |||||||||| ||||||||||| |||||||||||||   | ||||||| |||||  | ||| ||||||| ||| | ||| |||| || ||||  |||||     
T  12051793 tcaaccttcaaatttatcaaacatttaaccatataggacaaaatctca-ttttcgcgacaaaggtcattccaatatttttatttaacagaatacaaacc- 12051696  T
Q  159 aaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatcaaactt 222  Q
    ||||||| ||||  ||||||||| |||||| |||||| |||||| ||||||||||||| |||||    
T  12051695 aaataggttcac--atcatgttttaaatcatgggacacgttcaaccttcccatttatctaactt 12051634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 20633295 - 20633454
Alignment:
Q  59 tcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtcatttcaagactttcattttaccgaatctaaacca 158  Q
    |||||||||| ||||||||||  |||||||||||||   | ||||||||||| || | ||| ||||||| ||| | ||| |||| || ||||  ||||||    
T  20633295 tcaaccttcaaatttatcaaatatttaaccatataggacaaaatctcatttt-cacgacaaaggtcattccaatatttttatttaacagaatacaaacca 20633393  T
Q  159 aaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatcaaactt 222  Q
    || |||| ||||||  ||||||| |||||| | ||||||||||| ||||||||||||| |||||    
T  20633394 aa-taggttcacat--catgttttaaatcacgagacatgttcaaccttcccatttatctaactt 20633454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 20640473 - 20640552
Alignment:
Q  117 caagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacat 196  Q
    ||||||||||| ||| ||||||||||||||||||  ||| | ||||||| ||||||||||| ||||  ||||||||||||    
T  20640473 caagggtcattccaatactttcattttaccgaatacaaaaccaaataggttcacatatcatatttcgcatcaagggacat 20640552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 12050197 - 12049995
Alignment:
Q  17 acaaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatgg 116  Q
    |||||||| |||||   |||||||||||||| | ||||||  ||| || ||| |||||||||| || ||||||||||  | | ||||||||||| |  |     
T  12050197 acaaatatcatgttttgcatcaaaggacatcaaaggacaagttcagccatcaaatttatcaaatttctaaccatataagccaaaatctcatttt-cgcga 12050099  T
Q  117 caagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatc 216  Q
    ||| ||||||| ||| | ||| |||| |||||||  ||| | ||||||| ||||||  ||||||| ||||||| ||||| | |||||| || ||||||||    
T  12050098 caaaggtcattccaatatttttatttaaccgaatacaaaaccaaataggttcacat--catgttttaaatcaaaggacacgctcaatcatcgcatttatc 12050001  T
Q  217 aaactt 222  Q
    ||||||    
T  12050000 aaactt 12049995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 181
Target Start/End: Complemental strand, 12050293 - 12050183
Alignment:
Q  70 atttatcaaacttttaaccatatagactacaatctcattttt-catggcaagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctc 168  Q
    |||| |||||||| ||||||||||| ||| |||||||||||| ||   ||||||||||| ||| |||||||||||||||||| ||||   |||||||  |    
T  12050293 atttgtcaaacttgtaaccatataggctaaaatctcatttttgcaa--caagggtcattccaatactttcattttaccgaatttaaaatcaaataggtac 12050196  T
Q  169 acatatcatgttt 181  Q
    | |||||||||||    
T  12050195 aaatatcatgttt 12050183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 20633721 - 20633881
Alignment:
Q  59 tcaaccttcatatttatcaaacttt-taaccatatagactacaatctcatttttcatggcaagggtcatttcaagactttcattttaccgaatctaaacc 157  Q
    |||||||||  ||||||||||| || |||||||||||||||  | |||||||| |  | ||||||||||| ||| | ||  |||| |||||||  |||||    
T  20633721 tcaaccttcccatttatcaaacattgtaaccatatagactaagaactcatttt-cgggacaagggtcattccaatatttatatttaaccgaatacaaacc 20633819  T
Q  158 aaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatcaaactt 222  Q
    ||| |||| ||||||  ||||||| |||||| |||||| |||||| ||||||||||||| |||||    
T  20633820 aaa-taggttcacat--catgttttaaatcacgggacacgttcaaccttcccatttatctaactt 20633881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 20640390 - 20640442
Alignment:
Q  173 atcatgtttcaaatcaagggacatgttcaatcttcccatttatcaaacttgta 225  Q
    ||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||    
T  20640390 atcatgtttcacatcaagggacaagttcaaacttcccatttaccaaacttgta 20640442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 20652541 - 20652593
Alignment:
Q  173 atcatgtttcaaatcaagggacatgttcaatcttcccatttatcaaacttgta 225  Q
    ||||||||||| || |||||||| |||||| ||||||||||||||||||||||    
T  20652541 atcatgtttcacattaagggacaagttcaaacttcccatttatcaaacttgta 20652593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 20652557 - 20652703
Alignment:
Q  49 agggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtcatttcaagactttcattttaccga 148  Q
    ||||||||  |||| ||||  ||||||||||||| ||  ||||||||| | |||||| |||| |  | |||| |||||| ||| ||||||||||||||||    
T  20652557 agggacaagttcaaacttcccatttatcaaacttgtaggcatatagaccaaaatctcgtttt-cgcgacaagtgtcattccaatactttcattttaccga 20652655  T
Q  149 atctaaaccaaaataggctcacatatcatgtttcaaatcaagggacat 196  Q
    ||  |||   ||||||| |||||||| |||||||  ||||||||||||    
T  20652656 atacaaaaacaaataggttcacatattatgtttcgcatcaagggacat 20652703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 222
Target Start/End: Complemental strand, 12052645 - 12052485
Alignment:
Q  59 tcaaccttcatatttatcaaacttt-taaccatatagactacaatctcatttttcatggcaagggtcatttcaagactttcattttaccgaatctaaacc 157  Q
    |||||||||  ||||||||||| || |||||||||| |||| || || ||||| |  | ||||||||||| ||| | ||  |||| |||||||  |||||    
T  12052645 tcaaccttcccatttatcaaacattgtaaccatataaactaaaaactgatttt-cgcgacaagggtcattccaatatttctatttaaccgaatacaaacc 12052547  T
Q  158 aaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatcaaactt 222  Q
    ||| |||| ||||||  ||||||| |||||| |||||| |||||| ||||||||||||| |||||    
T  12052546 aaa-taggttcacat--catgttttaaatcatgggacacgttcaaccttcccatttatctaactt 12052485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 12051874 - 12051763
Alignment:
Q  117 caagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatc 216  Q
    ||||| ||||| ||| |||||||||||||||||| |||| |||||||||  || | ||||||||||  || || ||||| |||||| ||||  |||||||    
T  12051874 caaggatcattccaatactttcattttaccgaatttaaa-caaaataggtacaaacatcatgtttcgcattaaaggacaagttcaaccttcaaatttatc 12051776  T
Q  217 aaacttgtaacca 229  Q
    |||| | ||||||    
T  12051775 aaacatttaacca 12051763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 12052399 - 12052335
Alignment:
Q  18 caaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatatttatcaaactt 82  Q
    |||||||  |||||| |||||| ||| ||||||||||||   |||||||||||||||||||||||    
T  12052399 caaatatcttgttacgcatcaagggatatcgagggacaaggccaaccttcatatttatcaaactt 12052335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 196
Target Start/End: Original strand, 20650850 - 20650961
Alignment:
Q  84 taaccatatagactacaatctcatttttcatggcaagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttca 183  Q
    |||||| |||| ||| ||||||||||| |  | ||||||||||||| | |||||||||||||| ||| |||| | | ||||| ||| |||||||||||      
T  20650850 taaccacataggctaaaatctcattttccc-gacaagggtcatttcgatactttcattttaccaaatttaaaaccagataggttcaaatatcatgttttc 20650948  T
Q  184 aatcaagggacat 196  Q
    |||||| ||||||    
T  20650949 aatcaaaggacat 20650961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 20650950 - 20650994
Alignment:
Q  35 atcaaaggacatcgagggacaaactcaaccttcatatttatcaaa 79  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||    
T  20650950 atcaaaggacatcaagggacaacttcaaccttcatatttatcaaa 20650994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 20653241 - 20653285
Alignment:
Q  49 agggacaaactcaaccttcatatttatcaaacttttaaccatata 93  Q
    |||||||  ||||||||||||||||||||||||| ||||||||||    
T  20653241 agggacatgctcaaccttcatatttatcaaacttgtaaccatata 20653285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 196
Target Start/End: Original strand, 20640043 - 20640179
Alignment:
Q  59 tcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtcatttcaagactttcattttaccgaatctaaacca 158  Q
    ||||||||||||||||| |||||| |||| |||||  ||| |||||| ||||| | | ||||| |||| |||  ||||||  |||| ||||| |||| |     
T  20640043 tcaaccttcatatttatgaaacttctaacaatataagctaaaatctcgttttt-acgacaaggatcatctcattactttctatttatcgaatttaaaacc 20640141  T
Q  159 aaataggctcacatatcatgtttcaaatcaagggacat 196  Q
    ||||||| ||| |||| ||||| || ||||| ||||||    
T  20640142 aaataggttcaaatattatgttacacatcaaaggacat 20640179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 20647965 - 20648010
Alignment:
Q  42 gacatcgagggacaaactcaaccttcatatttatcaaacttttaac 87  Q
    ||||||||| ||||| |||||||||| |||||||||||||| ||||    
T  20647965 gacatcgagcgacaagctcaaccttcctatttatcaaacttctaac 20648010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 12042231 - 12042187
Alignment:
Q  18 caaatattatgttactcatcaaaggacatcgagggacaaactcaa 62  Q
    ||||||||||| ||| ||||||||||||| |||||||||| ||||    
T  12042231 caaatattatgctacgcatcaaaggacattgagggacaaattcaa 12042187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 12042742 - 12042706
Alignment:
Q  183 aaatcaagggacatgttcaatcttcccatttatcaaa 219  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  12042742 aaatcaagggacaagttcaatcttcccatttaacaaa 12042706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 12051043 - 12050971
Alignment:
Q  124 catttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacat 196  Q
    |||| ||| ||||||||||||||||||  ||| | ||||| | | ||||||||||||||  ||||||||||||    
T  12051043 cattccaatactttcattttaccgaatacaaaaccaaataagttgacatatcatgtttcgcatcaagggacat 12050971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 51 - 167
Target Start/End: Complemental strand, 110825 - 110709
Alignment:
Q  51 ggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtcatttcaagactttcattttaccgaat 150  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  110825 ggacaaattcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatgacaagggtcatttcaagactttcattttaccgaat 110726  T
Q  151 ctaaaccaaaataggct 167  Q
     |||| |||||||||||    
T  110725 ttaaatcaaaataggct 110709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 110649 - 110491
Alignment:
Q  21 atattatgttactcatcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaag 120  Q
    |||| ||||| | |||||| ||| ||||||||||  | |||||||||||||||||||||||  ||||||||||  ||| ||||||||||||  ||  |||    
T  110649 atatcatgtttcgcatcaagggagatcgagggacttaatcaaccttcatatttatcaaactagtaaccatataagctaaaatctcattttt-gtgataag 110551  T
Q  121 ggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtt 180  Q
    | ||||  ||  ||||||| |||||||||| |||| | ||||||| ||| |||| |||||    
T  110550 gatcatcccattactttcagtttaccgaatttaaaaccaaataggttcaaatattatgtt 110491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 110503 - 110464
Alignment:
Q  18 caaatattatgttactcatcaaaggacatcgagggacaaa 57  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  110503 caaatattatgttactcatcaaaggacatcaagagacaaa 110464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 12999548 - 12999340
Alignment:
Q  18 caaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggc 117  Q
    ||||||| ||||| | |||||| ||||||| ||||||||  | |||||||||| |||| |||||| ||||||||||| ||| ||||||| |||||  | |    
T  12999548 caaatatcatgtttcgcatcaagggacatcaagggacaagttgaaccttcatacttattaaacttgtaaccatataggctaaaatctca-ttttcgcgtc 12999450  T
Q  118 aagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatca 217  Q
    ||| ||| || |||||||||||||||||||||| |||| ||||||||| ||||||  ||||||   |||||||||||| |||||| | ||||||||| ||    
T  12999449 aagagtccttccaagactttcattttaccgaatgtaaaacaaaataggttcacatgacatgtt--caatcaagggacaagttcaaccatcccatttacca 12999352  T
Q  218 aacttgtaacca 229  Q
    |||||| |||||    
T  12999351 aacttggaacca 12999340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 12999259 - 12999085
Alignment:
Q  21 atattatgttactcatcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaag 120  Q
    |||| ||||| | |||||| ||||||||||||||||  || ||||||||||||||||||||| ||||||| ||| ||| ||| ||| |||||  | ||||    
T  12999259 atatcatgtttcgcatcaagggacatcgagggacaagttctaccttcatatttatcaaacttgtaaccatgtaggctaaaatatca-ttttcgcgacaag 12999161  T
Q  121 ggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacat 196  Q
    ||||||| ||| ||||| || ||||||||| |||| | ||| ||| ||||||||||||||||  ||||||||||||    
T  12999160 ggtcattccaatactttaatcttaccgaatataaaaccaaagaggttcacatatcatgtttcgcatcaagggacat 12999085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 41 - 196
Target Start/End: Complemental strand, 12999823 - 12999669
Alignment:
Q  41 ggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtcatttcaagactttcat 140  Q
    ||||||||||||||||  |||||||||||||||||||||||| ||||||| ||| ||| ||||||| |||||  | ||||||||||| ||| ||||| ||    
T  12999823 ggacatcgagggacaagttcaaccttcatatttatcaaacttgtaaccatgtaggctaaaatctca-ttttcgggacaagggtcattccaatactttaat 12999725  T
Q  141 tttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacat 196  Q
     |||||||||  ||| | ||| ||| ||||||||||||||||  ||||||||||||    
T  12999724 cttaccgaatacaaaaccaaagaggttcacatatcatgtttcgcatcaagggacat 12999669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 12999380 - 12999234
Alignment:
Q  49 agggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtcatttcaagactttcattttaccga 148  Q
    ||||||||  |||||| ||  ||||| |||||||  ||||||||| |||| ||||||||||| |  | ||||||| | | ||| ||||||||||||||||    
T  12999380 agggacaagttcaaccatcccatttaccaaacttggaaccatatacactaaaatctcatttt-cgcgacaagggttaatccaatactttcattttaccga 12999282  T
Q  149 atctaaaccaaaataggctcacatatcatgtttcaaatcaagggacat 196  Q
    ||  ||| | ||||||| ||||||||||||||||  ||||||||||||    
T  12999281 atacaaaaccaaataggttcacatatcatgtttcgcatcaagggacat 12999234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 196
Target Start/End: Complemental strand, 12999943 - 12999818
Alignment:
Q  70 atttatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctca 169  Q
    ||||| ||||||| |||||||||| |||| ||||||| |||||| | ||||||| | | ||| ||||||||||||||||||  |||   ||||||| |||    
T  12999943 atttaccaaacttgtaaccatatacactaaaatctca-ttttcacgacaagggttaatccaatactttcattttaccgaatacaaaatcaaataggttca 12999845  T
Q  170 catatcatgtttcaaatcaagggacat 196  Q
     ||||||||||||  ||| ||||||||    
T  12999844 gatatcatgtttcgcatctagggacat 12999818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 12999999 - 12999924
Alignment:
Q  152 taaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatcaaacttgtaacca 229  Q
    |||| ||||||||| ||||||  |||||||  ||||||| |||| |||||| | ||||||||| ||||||||||||||    
T  12999999 taaaacaaaataggttcacatgacatgttt--aatcaagagacaagttcaaccatcccatttaccaaacttgtaacca 12999924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 67; Significance: 7e-30; HSPs: 7)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 226
Target Start/End: Complemental strand, 34559 - 34378
Alignment:
Q  44 catcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtcatttcaagactttcatttt 143  Q
    |||| ||||||||  |||||||||||||||||| ||||| ||||||||||||||| ||||  ||||| || | |||||||||||  || ||| | || ||    
T  34559 catcaagggacaagttcaaccttcatatttatccaacttgtaaccatatagactaaaatcgaatttt-cacgacaagggtcattctaatactcttatatt 34461  T
Q  144 accgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatcaaacttgtaa 226  Q
    ||| |||  ||| | ||||||| ||||||||||| ||| ||||||| ||||| |||||| |||||||||||||||||||||||    
T  34460 accaaattcaaaaccaaataggttcacatatcattttttaaatcaatggacaagttcaaccttcccatttatcaaacttgtaa 34378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 34293 - 34087
Alignment:
Q  21 atattatgttactcatcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaag 120  Q
    |||| ||||| | |||||||||||||||||| | ||  |||| ||||  ||||||||||||| ||| ||| |||   | ||| ||||||| |  | ||||    
T  34293 atatcatgtttcgcatcaaaggacatcgaggcagaagttcaaacttcccatttatcaaacttctaagcatctaggtcaaaatgtcatttt-cgcgtcaag 34195  T
Q  121 ggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatc-aaa 219  Q
     |||||| |||||||||||||||||||||| |||| ||||||||| |||||| | ||||||  |||||||||||| |||||| | ||||||||| | |||    
T  34194 agtcattccaagactttcattttaccgaatttaaaacaaaataggttcacatgttatgttt--aatcaagggacaagttcaaccatcccatttaccaaaa 34097  T
Q  220 cttgtaacca 229  Q
    ||||||||||    
T  34096 cttgtaacca 34087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 120 - 226
Target Start/End: Complemental strand, 34762 - 34656
Alignment:
Q  120 gggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatcaaa 219  Q
    |||||||| ||| ||||||||||||||||||  ||| | ||||||| ||||| | ||||||| |||| |||||||| |||||| ||||||||||||||||    
T  34762 gggtcattccaatactttcattttaccgaatacaaaaccaaataggttcacaaaccatgttttaaattaagggacaagttcaaccttcccatttatcaaa 34663  T
Q  220 cttgtaa 226  Q
    | |||||    
T  34662 cctgtaa 34656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 34626 - 34514
Alignment:
Q  117 caagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacatgttcaatcttcccatttatc 216  Q
    |||||| |||||||| ||||||||||||||| || || | | | ||||| ||| ||||||||||||  ||||||||||| |||||| ||||  |||||||    
T  34626 caagggccatttcaatactttcattttaccgtatttacaaccacataggttcaaatatcatgtttcgcatcaagggacaagttcaaccttcatatttatc 34527  T
Q  217 aaacttgtaacca 229  Q
     ||||||||||||    
T  34526 caacttgtaacca 34514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 32084 - 32019
Alignment:
Q  42 gacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcat 107  Q
    |||||||||||||||  |||||||||||| |||| |||||| ||||||||||| ||| ||||||||    
T  32084 gacatcgagggacaagttcaaccttcatacttattaaacttgtaaccatataggctaaaatctcat 32019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 34099 - 33995
Alignment:
Q  77 aaacttttaaccatatagactacaatctcatttttcatggcaagggtcatttcaagactttcattttaccgaatctaaaccaaaataggctcacatatca 176  Q
    |||||| |||||||||| |||| ||||||||||| |  | ||||||| | | ||| ||||||||||||||||||  ||| | ||||||| ||||||||||    
T  34099 aaacttgtaaccatatacactaaaatctcatttt-cgcgacaagggttaatccaaaactttcattttaccgaatacaaaaccaaataggttcacatatca 34001  T
Q  177 tgtttc 182  Q
    ||||||    
T  34000 tgtttc 33995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 196
Target Start/End: Complemental strand, 34405 - 34268
Alignment:
Q  59 tcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtcattt-caagactttcattttaccgaatctaaacc 157  Q
    |||||||||  ||||||||||||| ||| ||||||  | | |||||| |||| |  | |||||||||||| ||| || ||||||||||||||| | || |    
T  34405 tcaaccttcccatttatcaaacttgtaagcatataccccaaaatctcgtttt-cgcgacaagggtcattttcaatacattcattttaccgaatatcaagc 34307  T
Q  158 aaaataggctcacatatcatgtttcaaatcaagggacat 196  Q
     ||||||| ||||||||||||||||  ||||| ||||||    
T  34306 caaataggttcacatatcatgtttcgcatcaaaggacat 34268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 172
Target Start/End: Complemental strand, 24513046 - 24512911
Alignment:
Q  36 tcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtcatttcaagact 135  Q
    |||| ||||||||||||| |   |||||||||| | ||||||||| ||||||||||||| ||||||||||||||| |  | |||||||||||||||||||    
T  24513046 tcaagggacatcgagggatatgttcaaccttcaaaattatcaaacctttaaccatataggctacaatctcatttt-cgcgacaagggtcatttcaagact 24512948  T
Q  136 ttcattttaccgaatctaaaccaaaataggctcacat 172  Q
    ||||||||||||||| |||  ||||||||| ||||||    
T  24512947 ttcattttaccgaatttaatacaaaataggttcacat 24512911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 24513568 - 24513477
Alignment:
Q  20 aatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcattttt 111  Q
    ||||||||||||| ||||||||||||||||||||| || ||||||||||||| |||||||||| ||||||||||| ||| ||||||||||||    
T  24513568 aatattatgttacgcatcaaaggacatcgagggacgaattcaaccttcatatctatcaaacttctaaccatataggctaaaatctcattttt 24513477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 196
Target Start/End: Complemental strand, 24513196 - 24513036
Alignment:
Q  35 atcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtcatttcaagac 134  Q
    ||||| ||| || |||||||||  |||||||||||| |||||||| || ||||||| ||| ||| ||||||  |||||  | |||||| |||| ||| ||    
T  24513196 atcaagggaaattgagggacaagttcaaccttcatagttatcaaaattgtaaccatgtaggctaaaatctc-gttttcgcgacaagggacattccaatac 24513098  T
Q  135 tttcattttaccgaat-ctaaaccaaaataggctcacatatcatgtttcaaatcaagggacat 196  Q
    |||||||||||||||| | ||| | ||||||| ||||||||||||||||   |||||||||||    
T  24513097 tttcattttaccgaatacgaaatc-aaataggttcacatatcatgtttcgcgtcaagggacat 24513036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 194
Target Start/End: Complemental strand, 24513750 - 24513626
Alignment:
Q  71 tttatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtcatttc--aagactttcattttaccgaatctaaaccaaaataggctc 168  Q
    |||||||||||| ||||||||||| ||| ||||||| |||||  | ||||||||||| |  |||||||||||||||||||||  ||| | ||||||  ||    
T  24513750 tttatcaaacttctaaccatataggctaaaatctca-ttttcgcgacaagggtcattccaaaagactttcattttaccgaatacaaaaccaaatagtttc 24513652  T
Q  169 acatatcatgtttcaaatcaagggac 194  Q
    | ||||||| ||||  ||||||||||    
T  24513651 atatatcatatttcgcatcaagggac 24513626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 9098439 - 9098292
Alignment:
Q  48 gagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtcatttcaagactttcattttaccg 147  Q
    |||||||||  ||||||||||||||||||||| || ||||||||||| ||| |||||| |||||   | |||||| |||| ||  |||||||||| ||||    
T  9098439 gagggacaagttcaaccttcatatttatcaaaattgtaaccatataggctaaaatctcgttttt-gcgacaagggacattccattactttcatttaaccg 9098341  T
Q  148 aatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacat 196  Q
    |||  |||   ||||||| ||||||||||||||||   |||||||||||    
T  9098340 aatacaaaatcaaataggttcacatatcatgtttcgcgtcaagggacat 9098292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 196
Target Start/End: Complemental strand, 9098848 - 9098726
Alignment:
Q  73 tatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtcatttcaagactttcattttaccgaat-ctaaaccaaaataggctcaca 171  Q
    |||||||||| || |||||||||| | |||||||||||  | | |||||||||||  || ||||| ||||| | |||| | ||||||||| ||| |||||    
T  9098848 tatcaaacttgtagccatatagaccaaaatctcattttcga-gacaagggtcattctaatacttttattttgctgaatacaaaaccaaaa-aggttcaca 9098751  T
Q  172 tatcatgtttcaaatcaagggacat 196  Q
    |||||||||||  ||||||||||||    
T  9098750 tatcatgtttcgtatcaagggacat 9098726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1937 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1937
Description:

Target: scaffold1937; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 196
Target Start/End: Complemental strand, 198 - 64
Alignment:
Q  61 aaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtcatttcaagactttcattttaccgaatctaaaccaaa 160  Q
    |||||||||| |||| |||||| ||||||||||| ||| ||||||||||| |  | | ||||| | | ||| ||||||||||||||||||  |||   ||    
T  198 aaccttcatacttattaaacttgtaaccatataggctaaaatctcatttt-cgcgacgagggttaatccaatactttcattttaccgaatacaaaatcaa 100  T
Q  161 ataggctcacatatcatgtttcaaatcaagggacat 196  Q
    ||||| ||||||||||||||||  |||| |||||||    
T  99 ataggttcacatatcatgtttcgcatcacgggacat 64  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 196
Target Start/End: Complemental strand, 48102 - 47948
Alignment:
Q  41 ggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaatctcatttttcatggcaagggtcatttcaagactttcat 140  Q
    ||||||||||||||||  |||| ||||||||||||||||||| ||||||| ||  ||| ||||||||||| |  | ||||| ||||| | | ||||| ||    
T  48102 ggacatcgagggacaagttcaatcttcatatttatcaaacttgtaaccatgtatgctaaaatctcatttt-cgcgacaaggttcattcctatactttaat 48004  T
Q  141 tttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacat 196  Q
     |||  |||| |||| | ||| ||| ||||||||||||||||  || |||||||||    
T  48003 cttattgaatataaaaccaaagaggttcacatatcatgtttcgcatgaagggacat 47948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 48160 - 48097
Alignment:
Q  133 actttcattttaccgaatctaaaccaaaataggctcacatatcatgtttcaaatcaagggacat 196  Q
    ||||||||||||||||||  ||| | ||||||| ||||||||||||||||  || |||||||||    
T  48160 actttcattttaccgaatacaaaaccaaataggttcacatatcatgtttcgcattaagggacat 48097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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