View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8524_low_4 (Length: 638)
Name: NF8524_low_4
Description: NF8524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8524_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 207 - 491
Target Start/End: Complemental strand, 49297479 - 49297199
Alignment:
| Q |
207 |
caacctcattttgttagataatctacaagttctggaggaagtaagagatgcggctaacatcaagaagtatgccacaaagcttaaagcttccaaaaaa-ta |
305 |
Q |
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| T |
49297479 |
caacctcattttgttagataatctacaagttctggaggaagtaagagatgcggctaacatcaagaagtatgccacaaagcttaaagcttccaaaaaaata |
49297380 |
T |
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| Q |
306 |
caactcaaagttaatgctgagaaggatgcaaaataatgatatggttttgaaaaggataactagaccatcacaaactagcaagttatacttgaaaattaaa |
405 |
Q |
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| T |
49297379 |
caactcaaagttaatgctgagaaggatgcaaaataatgatatggttttgaaaaggataactagaccatcacaaactagcaagttatacttga-----aaa |
49297285 |
T |
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| Q |
406 |
ggaaaggcccgtatagctcatatcaggagcctagatgctggataatttaagcagagaacttctactcagattatagtaaaacatat |
491 |
Q |
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| T |
49297284 |
ggaaaggcccgtatagctcatatcaggagcctagatgctggataatttaagcagagaacttttactcagattatagtaaaacatat |
49297199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 49298046 - 49297857
Alignment:
| Q |
21 |
aggaacatttggcaccgtatgtgggaagagaaagaatcttcccactaatttctcatcatttgagaacatatgatacgatccacatctagtggcaaacgtg |
120 |
Q |
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| T |
49298046 |
aggaacatttggcaccgtatgtgggaagagaaagaatcttctcactgatttctcatcatttgagaacatatgatacgatccacatccagtggcaaacgtg |
49297947 |
T |
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| Q |
121 |
gggaaaggatggcgatgattcaaatggcaagcaataagtttcctcgacaagtgcaaatacgtagaaacttcgttgagacacgctttcaac |
210 |
Q |
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| T |
49297946 |
aagaaaggatggcgatgattcaaatggcaagcaataagtttcctcgacaagtgcaaatacgtagaaacttcggtgagacacgctttcaac |
49297857 |
T |
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