View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8524_low_6 (Length: 617)
Name: NF8524_low_6
Description: NF8524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8524_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 19 - 604
Target Start/End: Complemental strand, 42030620 - 42030035
Alignment:
| Q |
19 |
aacatactccagttccatcacttgtgctataatctgttccaaaaactgtcaatgcagagcgtctgccaactgcaacttgctgaacaaaaggcatgaggtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42030620 |
aacatactccagttccatcacttgtgctataatctgttccaaaaactgtcaatgcagagcgtctgccaactgcaacttgctgaacaaaaggcatgaggtt |
42030521 |
T |
|
| Q |
119 |
gttgggaattccgcgaggatcctcaccaatatgaccactaggatgtgcaccaacggggttgaagtatctcaacagtgttattttccatcctggatcagaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42030520 |
gttgggaattccgcgaggatcctcaccaatatgaccactgggatgtgcaccaacggggttgaagtatctcaacagtgttattttccatcctggatcagaa |
42030421 |
T |
|
| Q |
219 |
cggtagatatcacgacaaatttcttcaatgtatagctnnnnnnnnnnnnnnnnnnnctctcattagattctgataggatacatctgtaatctgtaatata |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42030420 |
cggtagatatcacgacaaatttcttcaatgtatagctgaaagaaaaagaaaaagaactctcattagattctgataggatacatctgtaatctgtaatata |
42030321 |
T |
|
| Q |
319 |
caaccaaaatataaacaagattgcaaagggaactcttgtttagctatccctaccaaagtatccgataagcaccctaaatagttctttagccataccttgg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
42030320 |
caaccaaaatataaacaagattgcaaagggaactcttgtttagctatccctaccaaagtatccgataagtaccctaaatagttctttagtcataccttgg |
42030221 |
T |
|
| Q |
419 |
ttcgtccatatgggcttgcagctgataaaggaaactcttcagtgcaggggacctcctttggccaaccatatacagtggctgaagaggagaacacaagctg |
518 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42030220 |
ttcgtccatatgggcttgcagccgataaaggaaactcttcagtgcaggggacctcctttggccaaccgtatacagtggctgaagaggagaacacaagctg |
42030121 |
T |
|
| Q |
519 |
aaatcaatcaagaaatacagaatcaggttcagtaacaaaattgcaacaaccaatctcacaagacactttaaggtagcagtattatc |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42030120 |
aaatcaatcaagaaatacagaatcaggttcagtaacaaaattgcaacaaccaatctcacaagacactttaaggtagcagtattatc |
42030035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 409 - 529
Target Start/End: Original strand, 2132152 - 2132272
Alignment:
| Q |
409 |
cataccttggttcgtccatatgggcttgcagctgataaaggaaactcttcagtgcaggggacctcctttggccaaccatatacagtggctgaagaggaga |
508 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| | ||||||||||||||| || || ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2132152 |
cataccttggttcgtccatatgggtttgctgctgacagaggaaactcttcagtacatggaacctcctttggccaaccatatacagtggctgaagatgaga |
2132251 |
T |
|
| Q |
509 |
acacaagctgaaatcaatcaa |
529 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
2132252 |
acacaagctgaaatcattcaa |
2132272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 2131675 - 2131904
Alignment:
| Q |
19 |
aacatactccagttccatcacttgtgctataatctgttccaaaaactgtcaatgcagagcgtctgccaactgcaacttgctgaacaaaaggcatgaggtt |
118 |
Q |
| |
|
||||||| ||||| |||||| ||| ||||||| ||||||||||||||| ||||| ||||||||||| || |||||||||| ||| ||||| || || |
|
|
| T |
2131675 |
aacataccccagtaccatcaactgttttataatcatttccaaaaactgtcagtgcaggacgtctgccaaccgctacttgctgaataaatggcataagatt |
2131774 |
T |
|
| Q |
119 |
gttgggaattccgcgaggatcctcaccaatatgaccactaggatgtgcaccaacggggttgaagtatctcaacagtgttattttccatcctggatcagaa |
218 |
Q |
| |
|
|| ||||| ||| |||||||||| ||||||| ||||||||| |||||||| || ||||||||||||||||| | |||||||||| ||||||||| | |
|
|
| T |
2131775 |
atttggaatcccgtgaggatcctccccaatataaccactagggtgtgcacccactgggttgaagtatctcaataacattattttccaatctggatcagca |
2131874 |
T |
|
| Q |
219 |
cggtagatatcacgacaaatttcttcaatg |
248 |
Q |
| |
|
|| | || ||||||||| |||||||||||| |
|
|
| T |
2131875 |
cgattgacatcacgacagatttcttcaatg |
2131904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 2127216 - 2127444
Alignment:
| Q |
19 |
aacatactccagttccatcacttgtgctataatctgttccaaaaactgtcaatgcagagcgtctgccaactgcaacttgctgaacaaaaggcatgaggtt |
118 |
Q |
| |
|
||||||| ||||| |||||| ||| ||||||| ||||||||| ||||| ||||| ||||||||||| || |||||||||| || |||||||| || |
|
|
| T |
2127216 |
aacataccccagtaccatcaactgtattataatcatttccaaaaattgtcagtgcaggccgtctgccaaccgctacttgctgaatgaatggcatgagatt |
2127315 |
T |
|
| Q |
119 |
gttgggaattccgcgaggatcctcaccaatatgaccactaggatgtgcaccaacggggttgaagtatctcaacagtgttattttccatcctggatcagaa |
218 |
Q |
| |
|
||| |||| ||| ||||||||||| ||||||| ||||||||| |||||||| || ||||| || |||||| | | | |||||||||| |||| |||| | |
|
|
| T |
2127316 |
gtttggaactccacgaggatcctctccaatataaccactagggtgtgcacccactgggttaaaatatctcgataatattattttccagtctggctcagca |
2127415 |
T |
|
| Q |
219 |
cggtagatatcacgacaaatttcttcaat |
247 |
Q |
| |
|
|| | | ||||||||||||||||||||| |
|
|
| T |
2127416 |
cgatgaacatcacgacaaatttcttcaat |
2127444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 409 - 519
Target Start/End: Original strand, 2127581 - 2127691
Alignment:
| Q |
409 |
cataccttggttcgtccatatgggcttgcagctgataaaggaaactcttcagtgcaggggacctcctttggccaaccatatacagtggctgaagaggaga |
508 |
Q |
| |
|
||||||||||| ||||| |||||| |||| ||||| | |||||||||||| || || || ||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
2127581 |
cataccttggtacgtccgtatgggtttgctgctgacagaggaaactcttctgtacatggaacctcctttggccaaccatatacagtggccgaagatgaga |
2127680 |
T |
|
| Q |
509 |
acacaagctga |
519 |
Q |
| |
|
||||||||||| |
|
|
| T |
2127681 |
acacaagctga |
2127691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University